| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,098,930 – 4,098,982 |
| Length | 52 |
| Max. P | 0.899973 |
| Location | 4,098,930 – 4,098,982 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 67.31 |
| Shannon entropy | 0.57454 |
| G+C content | 0.39599 |
| Mean single sequence MFE | -10.94 |
| Consensus MFE | -6.00 |
| Energy contribution | -5.72 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.899973 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4098930 52 - 22422827 AAUUCUAGGCAAUC-----AAAACGGCAGAUGUAAUUACAAUUUGUCGGUCGCGCCG .......(((....-----....((((((((((....)).)))))))).....))). ( -12.32, z-score = -1.73, R) >droSec1.super_4 3547038 56 + 6179234 AAUUCUAGGCAAUCAAAUGAAAUCGGCAAAUGUAAUUACAAUUUGUCGG-CGCGCCG .......(((..((....))..(((((((((((....)).)))))))))-...))). ( -13.80, z-score = -1.94, R) >droYak2.chrX 17432146 57 + 21770863 AAUCUUAGGCAAUCAAAUGUAAACGGAAAAUGUAAUUACAAUUUUCCGGCAGCGUCG ................((((...((((((((((....)).))))))))...)))).. ( -10.90, z-score = -1.83, R) >droEre2.scaffold_4690 1469195 57 - 18748788 AAUCUUAGGCAAUCAAAUGAAAGCGGAAAAUGUAAUUACAAUUUUCCGGCAGCGUCG .......(((..((....))...((((((((((....)).)))))))).....))). ( -11.30, z-score = -1.50, R) >droGri2.scaffold_15126 6102636 51 - 8399593 --UUCUACACAUUC----GCUAAGAAAAUGUGAAACUGCAGUGUGCAAAUGGUUUUG --.....(((((((----.....))..)))))....(((.....))).......... ( -6.40, z-score = 0.77, R) >consensus AAUUCUAGGCAAUCAAAUGAAAACGGAAAAUGUAAUUACAAUUUGCCGGCAGCGUCG .......................(((((((((......)).)))))))......... ( -6.00 = -5.72 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:46 2011