| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,096,823 – 4,096,917 |
| Length | 94 |
| Max. P | 0.610763 |
| Location | 4,096,823 – 4,096,917 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 81.70 |
| Shannon entropy | 0.29689 |
| G+C content | 0.40567 |
| Mean single sequence MFE | -23.12 |
| Consensus MFE | -12.88 |
| Energy contribution | -12.72 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.610763 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4096823 94 + 22422827 CAACAACGAUUUGAUAUGACCCUCUCGACUGAUAAGCGGAUUUAAGCUAAGUC-----------AAAAGACCUCUGGUUAGCCAUAAUUGUGGCUUUAUAAUACA ................(((((.....((((....(((........))).))))-----------...((....)))))))(((((....)))))........... ( -17.40, z-score = -0.70, R) >droSim1.chrX 3060371 90 + 17042790 CAACAACGUUUUGAUAUGACCCUGUCGACUGAUAAGCGGAUUUAAGCUAAGUC-----------GAAAUACCUCUG-UCAGCCAUAAUUGUGGCUUUA-AACA-- .......(((((((((.((.....((((((....(((........))).))))-----------))......))))-)))(((((....)))))...)-))).-- ( -22.40, z-score = -2.50, R) >droSec1.super_4 3544873 90 - 6179234 CAACAACGAUUUGAUAUGACCCUGUCGACUGAUAAGCGGAUUUAAGCUAAGUC-----------GAAAUACCUCUG-UCAGCCAUAAUUGUGGCUUUA-AACA-- ...........(((((.((.....((((((....(((........))).))))-----------))......))))-)))(((((....)))))....-....-- ( -21.20, z-score = -2.25, R) >droYak2.chrX 17430101 97 - 21770863 CAACAAAAAUGUAAUAUGACCCUGUCGACUGAUAAGCGGAUUUAAGCUAAGUCGGUCCUUAGUCGAAAUACCUCUG-CCAGCCAUAAUUGUGGUUGUA------- ........................((((((((...((.((((((...)))))).))..))))))))..........-.(((((((....)))))))..------- ( -22.70, z-score = -1.69, R) >droEre2.scaffold_4690 1466953 97 + 18748788 CAACAAAGAUUUGAUAUGACCCUGUCGACUGAUAAGCGGAUUUCAGCUAAGUCCGUCCUUAGUCGGUAGACUUCUG-UCAGCCAUAAUAGUGGCUUUA------- ...........(((((.((..((..(((((((...((((((((.....))))))))..)))))))..))..)).))-)))(((((....)))))....------- ( -31.90, z-score = -3.65, R) >consensus CAACAACGAUUUGAUAUGACCCUGUCGACUGAUAAGCGGAUUUAAGCUAAGUC___________GAAAUACCUCUG_UCAGCCAUAAUUGUGGCUUUA_AA_A__ ..........................((((....(((........))).))))..........................((((((....)))))).......... (-12.88 = -12.72 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:45 2011