| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,091,094 – 4,091,189 |
| Length | 95 |
| Max. P | 0.835062 |
| Location | 4,091,094 – 4,091,189 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 84.87 |
| Shannon entropy | 0.20034 |
| G+C content | 0.29105 |
| Mean single sequence MFE | -17.93 |
| Consensus MFE | -9.79 |
| Energy contribution | -9.57 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.96 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.835062 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4091094 95 + 22422827 AAGGGGGUUGUUAUAUACAUACAUAUUUCAAAUAGCCAUUAGCACUUUCGAUUAAUCAGUAAAUAUAUAUAGUAGCUAACUAAACGAAAGACCGA ..((.(((((((((((......))))....))))))).......((((((.(((.(.(((...((....))...))).).))).)))))).)).. ( -13.90, z-score = -0.41, R) >droSec1.super_4 3539379 81 - 6179234 AAGUGGGUUAUUAUAUA--------UUUUAAAUAGCCAUUAGCACUUUCGAUUAAUCAGUAAAUAUAUA--GUAGCCAACUAAACGAAAGG---- .(((.((((((((((((--------(((......((.....))......((....))...)))))))))--)))))).)))...(....).---- ( -18.80, z-score = -3.60, R) >droSim1.chrX 3055072 81 + 17042790 AAGUAGGUUAUUAUAUA--------UUUGAAAUAGCCAUUAGCACUUUCGAUUAAUCAGUAAAUAUAUA--GUAGCCAACUAAACGAAAGG---- .(((.((((((((((((--------(((((((..((.....))..))))((....))...)))))))))--)))))).)))...(....).---- ( -21.10, z-score = -4.86, R) >consensus AAGUGGGUUAUUAUAUA________UUUCAAAUAGCCAUUAGCACUUUCGAUUAAUCAGUAAAUAUAUA__GUAGCCAACUAAACGAAAGG____ .....(((((((..................))))))).......((((((........(((....)))....(((....)))..))))))..... ( -9.79 = -9.57 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:41 2011