| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,086,931 – 4,087,023 |
| Length | 92 |
| Max. P | 0.837532 |
| Location | 4,086,931 – 4,087,023 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 73.18 |
| Shannon entropy | 0.48157 |
| G+C content | 0.46898 |
| Mean single sequence MFE | -27.36 |
| Consensus MFE | -14.29 |
| Energy contribution | -17.83 |
| Covariance contribution | 3.54 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.837532 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4086931 92 + 22422827 UCGGGGCUGUUGGGGAGUGUGGGAAAAGCGGGCGGAAUCCAGAUGGAA--UCCCAUAAUAUCUGUUUGUUGUCGCUGGCACUUUUUAAAAGCAG .....(((.(((((((((((.((...((((((((((......((((..--..))))....))))))))))....)).))))))))))).))).. ( -32.90, z-score = -2.68, R) >droSim1.chrX 3049844 92 + 17042790 UAGGGGCAGUUGGGGAGUGUGGGAAAAACGGGCGGCAUCCAGAUGGAA--UCCCAUAAUAUCUGUUUGUUGUCGCUGGCACUUUUUAAAAGCAG .....((..(((((((((((.((.......(((((((..((((((...--........))))))..))))))).)).)))))))))))..)).. ( -29.90, z-score = -2.06, R) >droSec1.super_4 3535140 92 - 6179234 UAGGGGCAGUUGGGGAGUGUGGGAAAAACGGGCGGCAUCCAGAUGGAA--UCCCAUAAUAUCUGUUUGUUGUCGCUGGCACUUUUUAAAAGCAG .....((..(((((((((((.((.......(((((((..((((((...--........))))))..))))))).)).)))))))))))..)).. ( -29.90, z-score = -2.06, R) >droYak2.chrX 17420593 92 - 21770863 UAGGGGCAGUUGGGGAGUGUGGGAUAAGCGGGCGGAAUCCAGAUGGAA--UCCCAUAAUAUCUGUUUGUUGUCGCUGGCACUUUUUAAAAGCAG .....((..(((((((((((.((...((((((((((......((((..--..))))....))))))))))....)).)))))))))))..)).. ( -31.70, z-score = -2.73, R) >droEre2.scaffold_4690 1457371 92 + 18748788 UAGGGACAGUUGGGGAGUGUGGGAAAAGCGGGCGGAAUCCAGAUGGAA--UCCCAUAAUAUCUGUUUGUUGUCGCUGGCACUUUUUAAAAGCAG .........(((((((((((.((...((((((((((......((((..--..))))....))))))))))....)).)))))))))))...... ( -27.90, z-score = -1.75, R) >dp4.chrXL_group3a 2396810 86 + 2690836 ---GGAGGGGAAUUCUGUGGGAAAUACGCAGUCCUCCUAAUGAUGGAAAAUCCCAUAAUAUCU--CUACCAA-GCAAGUCCUAAUGAAGUGU-- ---((((((((...(((((.......)))))...))))....((((......)))).....))--)).....-(((..((.....))..)))-- ( -19.50, z-score = -0.17, R) >droPer1.super_11 563246 86 - 2846995 ---GGAGGGGAAUUCUGUGGGAAAUACACAGUCCUCAUAAUGAUGGAAAAUCCCAUAAUAUCU--CUACCAA-GCAAGUCCUAAUGAAGUGU-- ---((.(((((....(((((((.........(((((.....)).)))...)))))))...)))--)).))..-(((..((.....))..)))-- ( -19.70, z-score = -0.37, R) >consensus UAGGGGCAGUUGGGGAGUGUGGGAAAAGCGGGCGGCAUCCAGAUGGAA__UCCCAUAAUAUCUGUUUGUUGUCGCUGGCACUUUUUAAAAGCAG .....((..(((((((((((.((...(((((((((.......((((......)))).....)))))))))....)).)))))))))))..)).. (-14.29 = -17.83 + 3.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:40 2011