| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,084,082 – 4,084,194 |
| Length | 112 |
| Max. P | 0.749420 |
| Location | 4,084,082 – 4,084,194 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 66.10 |
| Shannon entropy | 0.63437 |
| G+C content | 0.44992 |
| Mean single sequence MFE | -20.09 |
| Consensus MFE | -7.15 |
| Energy contribution | -7.43 |
| Covariance contribution | 0.29 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.749420 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4084082 112 + 22422827 ----UAGCAACGACAAUUGAAAUGUAUCUGCCAGAUACAUUUACACAUACCUAUGCCCAGCCGGAGUUUCCCAAUUCCCGUUCCCAUUCCAAAGGAAAGAACACCCGAAAACCCAU ----..(((........(((((((((((.....))))))))).))........)))......((((((....)))))).((((...((((...)))).)))).............. ( -20.09, z-score = -2.75, R) >droAna3.scaffold_13117 256181 96 - 5790199 UCUGUAGUU----CAGUGUUUGUUGAAGUGGCAGAUAGGCUUACACAUGCU-----------GGAGUUUCCACACACUCAAUCCCCCUCCUCGGGAAAA-----UGGAAAAUCACA ((((((.((----(((......))))).).)))))..(((........)))-----------.((.((((((.........((((.......))))...-----)))))).))... ( -19.10, z-score = 1.45, R) >droEre2.scaffold_4690 1454638 116 + 18748788 UAAGCAGCAGCGGCAAUCUAAAUGUAUCUGCCAGAUACAUUUACACACGCCUAUCCUCAGCCGGAGUUUCCCGAUUUCCGUCCCCAUUCCAAAGUGAAUAACGCCAGAAAAUCAAU ...((....))(((....((((((((((.....))))))))))..(((.............(((((.........))))).............)))......)))........... ( -23.67, z-score = -2.32, R) >droYak2.chrX 17417937 116 - 21770863 UCUGCAGCAACGGCAGCCAGUAAGUAUCUGCCAGAUACAUUUACAAAUGCCUUUUCUCAGUCGGGGUUUCCCAAUUCCCGUGCCCAUUCCAAAGAAAAGAACACCCGAAAAUCCAA .(((.((.((.((((....(((((((((.....)))))..))))...)))).)).)))))(((((((((.....(((...((.......))..)))..)))).)))))........ ( -24.00, z-score = -1.19, R) >droSec1.super_4 3532406 94 - 6179234 UCAGUAGCAACGACAAUCGAAAUGUAUCUGCCAGAUACAUUUACACAUGCC-----------GGAGUUUCCCAAUUCCCG-----------AAGGAAAGAACACCCCAAAAUCCAU ......(((.((.....))(((((((((.....))))))))).....))).-----------((.(((((....((((..-----------..)))).))).)).))......... ( -17.30, z-score = -2.18, R) >droSim1.chrX 3047098 94 + 17042790 UCAGUAGCAACGACAAUCGAAAUGUAUCUGCCAGAUACAUUUACACAUGCC-----------GUAGUUCCCCAAUUCCCG-----------AAGGAAAGAACACCCCAAAAUCCAU ......(((.((.....))(((((((((.....))))))))).....))).-----------...((((.....((((..-----------..)))).)))).............. ( -16.40, z-score = -2.81, R) >consensus UCAGUAGCAACGACAAUCGAAAUGUAUCUGCCAGAUACAUUUACACAUGCC___________GGAGUUUCCCAAUUCCCGU_CCCAUUCCAAAGGAAAGAACACCCGAAAAUCCAU ...................(((((((((.....)))))))))....................((((((....))))))...................................... ( -7.15 = -7.43 + 0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:39 2011