| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,987,251 – 9,987,353 |
| Length | 102 |
| Max. P | 0.716908 |
| Location | 9,987,251 – 9,987,353 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 71.66 |
| Shannon entropy | 0.52956 |
| G+C content | 0.35560 |
| Mean single sequence MFE | -15.37 |
| Consensus MFE | -10.02 |
| Energy contribution | -10.56 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.14 |
| Mean z-score | -0.79 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.716908 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9987251 102 - 23011544 -CUACAUUACUUUGGUCUUUGGUCUGUU--UUCAUUCUCUUUUUCUUUUUUUACUUGUAAAGACAUUUAAUUGCCUUGAAUGUCAACGCAAAUGAACAAAUACAU-- -.............((.(((((..((..--..))..)............((((.((((...(((((((((.....)))))))))...)))).)))))))).))..-- ( -12.80, z-score = -0.33, R) >droSim1.chr2L 9771797 102 - 22036055 -CUACAUUACUCUGGUCUUUGGUCUGUU--UUCCUUCUUUUCUUUUUUUUUUACUUGUGAAGACAUUUAAUUGCCUUGAAUGUCAACGCAAAUGAACAAAUACAU-- -...................((......--..))...........(((.((((.(((((..(((((((((.....)))))))))..))))).)))).))).....-- ( -15.30, z-score = -1.04, R) >droSec1.super_3 5426960 100 - 7220098 -CUACAUUACCCUGGUCUUUGGUCUGUU--UUCCUUCUUUUC--UUUUUUUUACUUGUGAAGACAUUUAAUUGCCUUGAAUGUCAACGCAAAUGAACAAAUACAU-- -.........((........))......--............--.(((.((((.(((((..(((((((((.....)))))))))..))))).)))).))).....-- ( -15.50, z-score = -1.16, R) >droYak2.chr2L 12670824 88 - 22324452 -CUGCAUUAUUCUGGUCUUAGUCCGGAU----------------UUUUUUUUACUUGUGAAGACAUUUAAUUGCCUUGAAUGUCAACGCAAAUGAACAAAUACAU-- -.........(((((.......))))).----------------.(((.((((.(((((..(((((((((.....)))))))))..))))).)))).))).....-- ( -20.00, z-score = -2.53, R) >droEre2.scaffold_4929 10600441 90 - 26641161 -CUGUAUUACUUUGGUCAUACUCUGGAU--UU------------UCUUUUUUACUUUCGAAGACAUUUAAUUGCCUUGAAUGUCAACGCAAAUGAACAAAUACAU-- -.((((((.((((((.........((..--..------------.)).........))))))...((((.((((.(((.....))).)))).))))..)))))).-- ( -14.57, z-score = -1.51, R) >dp4.chr4_group3 11500354 106 + 11692001 CUCCUCCUGCCUCCUCCUCCG-CCAGAUAUUUCUCCCGUUUUGUGGUUUACUUUUUGUGGAGCCGUUUAAUUGCCUCGAAUGUCAACGCAAAUUAACAAAUAUAUGG .....................-(((.((((((............(((((((.....)).)))))(((...((((...(.....)...))))...))))))))).))) ( -13.00, z-score = 1.01, R) >droPer1.super_1 8616406 107 + 10282868 CUCCUCCUGCCUCCCCCUCCGCCCAGAUAUUUCUCCCGUUUUGUGGUUUACUUUUUGUGGAGCCGUUUAAUUGCCUCGAAUGUCAACGCAAAUGAACAAAUAUAUGG ......................(((.((((((............(((((((.....)).)))))(((((.((((...(.....)...)))).))))))))))).))) ( -16.40, z-score = 0.02, R) >consensus _CUACAUUACUUUGGUCUUUGGCCUGAU__UUC_UUCUUUUU_UUUUUUUUUACUUGUGAAGACAUUUAAUUGCCUUGAAUGUCAACGCAAAUGAACAAAUACAU__ ......................................................(((((..(((((((((.....)))))))))..)))))................ (-10.02 = -10.56 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:25 2011