| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,069,357 – 4,069,433 |
| Length | 76 |
| Max. P | 0.965383 |
| Location | 4,069,357 – 4,069,433 |
|---|---|
| Length | 76 |
| Sequences | 7 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 70.90 |
| Shannon entropy | 0.51636 |
| G+C content | 0.47585 |
| Mean single sequence MFE | -21.99 |
| Consensus MFE | -12.28 |
| Energy contribution | -12.71 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.965383 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4069357 76 - 22422827 ---------UGGUGCUUAUGGCUUCAAUGGCUCAAAUGCCAGCUAUCUGCGCUAUUCAAUCGCCCA------AUUGAAAG------GCAACUCACUC ---------((((((..((((((.....(((......)))))))))..))))))((((((......------))))))((------....))..... ( -22.20, z-score = -2.21, R) >droAna3.scaffold_13117 240761 96 + 5790199 CGCUCCUUAUGGC-UUUUUGGCUUCAAUGGCUGAUUCGUCGGCUAUCUCUGCCAUUCAAUCGCCCAUUGAAGAUUGAAAGGGGCGCGCACCGCACUC .(((((((.....-....((((....((((((((....))))))))....)))).((((((..........)))))))))))))(((...))).... ( -33.70, z-score = -2.29, R) >droSim1.chrX 3035564 76 - 17042790 ---------UGGUGCUUAUGGCUUCAAUGGCUCAAAUGCCAGCUAUCUGCGCUAUUCAAUCGCCCA------AUUGAAAG------GCAACUCACUC ---------((((((..((((((.....(((......)))))))))..))))))((((((......------))))))((------....))..... ( -22.20, z-score = -2.21, R) >droSec1.super_4 3518185 76 + 6179234 ---------UGGUGCUUAUGGCUUCAAUGGCUCAAAUGCCAGCUAUCUGCGCUAUUCAAUUGCCCA------AUUGAAAG------GCAACUCACUC ---------((((((..((((((.....(((......)))))))))..))))))(((((((....)------))))))((------....))..... ( -23.90, z-score = -2.63, R) >droEre2.scaffold_4690 1439245 76 - 18748788 ---------UGGUGCUUAUGGCUUCAAUGGCUCAAAUGCCAGCUAUCUGCGCUAUUCAAUCGCCCA------AUUGAAAG------GCAACUCACUC ---------((((((..((((((.....(((......)))))))))..))))))((((((......------))))))((------....))..... ( -22.20, z-score = -2.21, R) >droYak2.chrX 17403519 76 + 21770863 ---------UGGUGCUUAUGGCUUCAAUGGCUCAAAUGCCAGCUAUCUGCGCUAUUCAAUCGCCCA------AUUGAAAG------GCAACUCACUC ---------((((((..((((((.....(((......)))))))))..))))))((((((......------))))))((------....))..... ( -22.20, z-score = -2.21, R) >droMoj3.scaffold_6328 2397509 72 - 4453435 ------AGAUACCACACGCAUACCAAGUCACACUCGCAUCUGCUUUCUAUG--GCUGAUCCACGCA------AUUGAAGU-----UUCAAU------ ------...........((......(((((.....((....))......))--))).......)).------(((((...-----.)))))------ ( -7.52, z-score = 1.04, R) >consensus _________UGGUGCUUAUGGCUUCAAUGGCUCAAAUGCCAGCUAUCUGCGCUAUUCAAUCGCCCA______AUUGAAAG______GCAACUCACUC .........((((((..((((((.....(((......)))))))))..))))))........................................... (-12.28 = -12.71 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:38 2011