Locus 13048

Sequence ID dm3.chrX
Location 4,064,580 – 4,064,649
Length 69
Max. P 0.828179
window17932

overview

Window 2

Location 4,064,580 – 4,064,649
Length 69
Sequences 7
Columns 71
Reading direction reverse
Mean pairwise identity 69.48
Shannon entropy 0.61479
G+C content 0.43715
Mean single sequence MFE -13.77
Consensus MFE -7.10
Energy contribution -7.99
Covariance contribution 0.88
Combinations/Pair 1.35
Mean z-score -1.02
Structure conservation index 0.52
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.82
SVM RNA-class probability 0.828179
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 4064580 69 - 22422827
CCAGUGUAGUUCGAAGAC--AUUCAAUUGAGCGAAAAGUUGCUCGGUUAAUUGGAAUUGUCCACGUCCGCG
...(((.....((..(((--((((((((((.(((........))).)))))))))..))))..))..))). ( -17.60, z-score =  -1.46, R)
>droAna3.scaffold_13117 235482 57 + 5790199
UCACUGUAAUCUGUUGUUGGAACCAAUUGAGCGAAAAGUUGCCCAGCUAAUUGGAAG--------------
.........((((..(((((...(((((........))))).)))))....))))..-------------- (  -9.10, z-score =   0.15, R)
>droSim1.chrX 3030840 69 - 17042790
CCAGUGUAGUUCGAAGAC--AUUCAAUUGAGCGAAAAGUUGCUCGGUUAAUUGGAAUUGUCCACGUCCGCG
...(((.....((..(((--((((((((((.(((........))).)))))))))..))))..))..))). ( -17.60, z-score =  -1.46, R)
>droSec1.super_4 3513534 69 + 6179234
CUAGUGUAGUUCGAAGAC--AUUCAAUUGAGCGAAAAGUUGCUCGGUUAAUUGGAAUUGUCCACGUCCGCG
...(((.....((..(((--((((((((((.(((........))).)))))))))..))))..))..))). ( -17.60, z-score =  -1.45, R)
>droEre2.scaffold_4690 1434418 69 - 18748788
CCAGUGCACUUCGAAGAC--AUUCAAUUGAGCGAAAAGUUGCUCAGUUAAUUGGAAUUGUCCACGUCCGCG
...(((.((...(((...--.)))((((((((((....))))))))))...((((....)))).)).))). ( -17.70, z-score =  -1.57, R)
>droYak2.chrX 17398890 69 + 21770863
CCAGUGCACUUCAAAGAU--AUUCAAUUGAGCGAAAAGUUGCUCAGUUAAUUGGAAUUGUCCACGUCCCCG
...(((.(((((((.(..--...)((((((((((....))))))))))..)))))...)).)))....... ( -14.60, z-score =  -1.79, R)
>droWil1.scaffold_181150 2601542 66 + 4952429
-UUCUAAGACUCAAUUGAGCAACAACUUGAACAUGAAA----CAAACUAAUUGAAACUACGCCCAUUCCCA
-......(.(((....))))..................----............................. (  -2.20, z-score =   0.49, R)
>consensus
CCAGUGUAGUUCGAAGAC__AUUCAAUUGAGCGAAAAGUUGCUCAGUUAAUUGGAAUUGUCCACGUCCGCG
(((((..........((.....))((((((((((....)))))))))).)))))................. ( -7.10 =  -7.99 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:37 2011