| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,061,392 – 4,061,497 |
| Length | 105 |
| Max. P | 0.657752 |
| Location | 4,061,392 – 4,061,497 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 77.76 |
| Shannon entropy | 0.38284 |
| G+C content | 0.50904 |
| Mean single sequence MFE | -30.98 |
| Consensus MFE | -20.54 |
| Energy contribution | -21.30 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.657752 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4061392 105 - 22422827 GCAUCUUUGGAAGGCCGCGAACGUGC------UGGAUGUCACCAUCAUCCCCAGCAAUUCCC---CCUUCAUUUUCGGGUAGAUAUUAUCCCUUUAUUCGCCGCUUUCGGAGGA ...(((((.((((((.(((((..(((------((((((.......)))))..))))(((..(---((.........)))..)))............))))).)))))).))))) ( -34.40, z-score = -2.40, R) >droYak2.chrX 17395838 94 + 21770863 GCAUCUUUGG-GGGCCGCGAACGUGCUUGCGUUGGAUGUCAACAUCCACCUU-------------------UUUUCGGGUAGAUAUUAUCCCUUUAUUCUUCGUCUUCGGAGGA ...(((((((-(((((((((......))))).((((((....))))))....-------------------.....(((..........)))..........))))))))))). ( -26.70, z-score = -0.79, R) >droEre2.scaffold_4690 1431371 95 - 18748788 GCAUCUAUGGAGCGUCGAGAACGUGCUUGCCACGGAUGUCACAAUCCCCCU-------------------AUUUUCGGGUAGAUAUUAUCCCUUAAUUCUCCGUUUUCGGAGGA (((((..(((((((.((....))))))..)))..)))))....(((..(((-------------------......)))..)))............(((((((....))))))) ( -27.20, z-score = -1.21, R) >droSec1.super_4 3510465 114 + 6179234 GCAUCUUUGGAAGGCCGCGAACGUGCUUGCGUUGGAUGUCACCAUCAUCCCUAGUAGCCCCCCUUCCUCCAUUUUCUGGUAGAUAUUAUCCCUUUAUUCGCCGCUUUCGGAGGA ...(((((.((((((.(((((...(((.((...(((((.......)))))...)))))......((..(((.....)))..)).............))))).)))))).))))) ( -33.60, z-score = -1.85, R) >droSim1.chrX 3027751 113 - 17042790 GCAUCUUUGG-AGGCCGCGAACGUGCUUGCGUUGGAUGUCACCAUCGUCCCUAGUAGCCCCCCUUCCUCCAUUUUCGGGUAGAUAUUAUCCCUUUAUUCGCCGCUUUCGGAGGA ...(((((((-((((.(((((...(((.((...(((((.......)))))...)))))..................(((..........)))....))))).))))))))))). ( -33.00, z-score = -0.86, R) >consensus GCAUCUUUGGAAGGCCGCGAACGUGCUUGCGUUGGAUGUCACCAUCAUCCCUAG_A___CCC___CCU_CAUUUUCGGGUAGAUAUUAUCCCUUUAUUCGCCGCUUUCGGAGGA ...(((((.((((((.(((((............(((((.......)))))..........................(((..........)))....))))).)))))).))))) (-20.54 = -21.30 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:36 2011