| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,049,777 – 4,049,880 |
| Length | 103 |
| Max. P | 0.652306 |
| Location | 4,049,777 – 4,049,880 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 84.80 |
| Shannon entropy | 0.20261 |
| G+C content | 0.30032 |
| Mean single sequence MFE | -17.40 |
| Consensus MFE | -10.92 |
| Energy contribution | -11.92 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.652306 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4049777 103 + 22422827 AGAUAUGGAUGCGAACAUUCAACGAACGGUUCACAGUUUGAUAUUGUUAUUAAAAAAUUUCAGUCGAGCUAAAAAAAAAAGAAGUGAAAUAUAACAGUUAACC .....((((((....))))))......((((.((((((((((..((..(((....)))..)))))))))).............((........)).)).)))) ( -15.70, z-score = -0.69, R) >droSim1.chrX 3022981 90 + 17042790 AGAUAUGGAUGAGACCAUU----AAACGGUUGACAGUUUGAUAUUAUUAUUAAAAAAUUUCAGACGAGCUAAAAAA---------GAAAUCUAGCAGUUAACC ....((((......)))).----....(((((((.((((((.(((.((....)).))).))))))..((((.....---------......)))).))))))) ( -18.20, z-score = -3.12, R) >droSec1.super_4 3506210 90 - 6179234 AGAUAUGGAUGAGAACAUU----AAACGGUUGACAGUUUGAUAUUAUUAUUAAAAAAUUUCAGACGAGCUAACAAA---------GAAAUGUAGCAGUUAACC .......((((....))))----....(((((((.((((((.(((.((....)).))).))))))..((((.((..---------....)))))).))))))) ( -18.30, z-score = -3.32, R) >consensus AGAUAUGGAUGAGAACAUU____AAACGGUUGACAGUUUGAUAUUAUUAUUAAAAAAUUUCAGACGAGCUAAAAAA_________GAAAUAUAGCAGUUAACC .......((((....))))........(((((((.((((((.(((..........))).))))))..((((....................)))).))))))) (-10.92 = -11.92 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:35 2011