| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,047,509 – 4,047,663 |
| Length | 154 |
| Max. P | 0.813146 |
| Location | 4,047,509 – 4,047,663 |
|---|---|
| Length | 154 |
| Sequences | 4 |
| Columns | 174 |
| Reading direction | forward |
| Mean pairwise identity | 71.00 |
| Shannon entropy | 0.43715 |
| G+C content | 0.34428 |
| Mean single sequence MFE | -32.60 |
| Consensus MFE | -24.49 |
| Energy contribution | -24.05 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.813146 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4047509 154 + 22422827 CGAGAGCUUCAAAAAGUUUGACAAGUUAAAAAUAUGUAAUUACUGGCAACAGCCUUUGGUUGUUCAUGUUGGCCAAAAGUGUCAAGCUGGGAAAAAUAAUUUUUCC------UGAAAAUAUGUUAACACUUUCGGUACAGUGACAAUUAUCAUAGUGAUA-------------- ((((((........(((((((((..((...((((((((((((..(((....)))..))))))..)))))).....))..)))))))))(((((((.....))))))------)...............)))))).(((.((((......)))).)))...-------------- ( -37.30, z-score = -1.79, R) >droYak2.chrX 17388961 174 - 21770863 CGAAAGCUCUAAAAAGUUUGACAAGUUAAAAAUAUGUAAUUACUUGCAGCAGCCUUUAGUUGUUCAUGUUUGUUAAAAGUGUCAGACUGGGAAGAAUAAUUCUUUCAUUGCGCAGCAAUCUAUGUAGUACGAAAAUUUGUUAACAUUUUUAAUCAAGUUAUAACCGUAUUGAUA .....((((.....(((((((((..(((((((((((.(((.(((.((....))....))).)))))))))).))))...))))))))).((((((.....)))))).....).)))........(((((((..((((((((((.....)))).)))))).....)))))))... ( -35.60, z-score = -0.83, R) >droSec1.super_4 3503980 132 - 6179234 CGAGAGCUCCAAAAAGUUUGACAAGUUAAAAAUAUGUAAUUACUGGCAGCAGCCCUUAGUUGUUCAUGUUUGCCAAAAGUGUCAAGCUGGGAAAAAUAAUUUUUC-------UGCAAAUAUGUGACAACCGUAGUGAUC----------------------------------- .((..(((.(....(((((((((..((..(((((((((((((..(((....)))..))))))..)))))))....))..)))))))))(((((((.....)))))-------.(((....))).....))).)))..))----------------------------------- ( -28.80, z-score = -0.94, R) >droSim1.chrX 3020749 132 + 17042790 CGAGAGCUCCAAAAAGUUUGACAAGUUAAAAAUAUGUAAUUACUGGCAGCAGCCCUUAGUUGUUCAUGUUUGCCAAAAGUGUCAAGCUGGGAAAAAUAAUUUUUC-------UGCAAAUAUGUGACAACCGUAGUGAUA----------------------------------- ...(((((......)))))...................(((((((((....)))....(((((((((((((((....(((.....)))(((((((....))))))-------)))))))))).))))))...)))))).----------------------------------- ( -28.70, z-score = -0.84, R) >consensus CGAGAGCUCCAAAAAGUUUGACAAGUUAAAAAUAUGUAAUUACUGGCAGCAGCCCUUAGUUGUUCAUGUUUGCCAAAAGUGUCAAGCUGGGAAAAAUAAUUUUUC_______UGCAAAUAUGUGAAAACCGUAGUGAUA___________________________________ .......(((....(((((((((..((..(((((((((((((..(((....)))..))))))..)))))))....))..))))))))).))).................................................................................. (-24.49 = -24.05 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:31 2011