| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,024,615 – 4,024,710 |
| Length | 95 |
| Max. P | 0.604746 |
| Location | 4,024,615 – 4,024,710 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 66.61 |
| Shannon entropy | 0.49284 |
| G+C content | 0.47056 |
| Mean single sequence MFE | -28.02 |
| Consensus MFE | -9.76 |
| Energy contribution | -9.58 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.53 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.604746 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4024615 95 - 22422827 -UAUCCCACGUACCAGGCAAACAGAAUUGCCAGGAAGUGACCA-ACGC---UCAUUUUGUUUCCAGUA---------------GACACCUUCCUGCUAAUUAUGAUCGCCUGGUG -.........((((((((...((.(((((.((((((((((...-....---)))...(((((.....)---------------)))).))))))).))))).))...)))))))) ( -27.40, z-score = -3.16, R) >droSim1.chrX_random 1559650 94 - 5698898 -UAUCCCAUGCACCAGGCAAACAGAAAUGCCAGGAAGUGGCUA-ACGC---UCAUUUUGUUCCCAGCA---------------GACACCUU-CUGCUAAUUAUGAUCGCCUGGUG -.........((((((((...((....))....((((((((..-..))---.))))))......((((---------------((.....)-)))))..........)))))))) ( -31.00, z-score = -3.14, R) >droSec1.super_4 5713022 94 + 6179234 -GAUCCCAUGCACCAGGCAAACAGAAAUGCCAGGAAGUGGCCA-ACGC---UCAUUUUGUUCCCAGUA---------------GACACCUU-CUGUUAAUUAUGAUCGCCUGGUG -.........((((((((..........((((.....))))..-..(.---((((...(((..(((.(---------------(....)).-)))..))).)))).))))))))) ( -26.90, z-score = -1.90, R) >droYak2.chrX 17366285 114 + 21770863 AUAUCCCAUGUGAUUGUUGGA-AGCGUGACAAAAAAUCAGUUACACGCGAGCCUCUCUAUUUUAGGCAAAACCAAGGAUCGUUGGCUGCCUACUGAGAUUUAUGUUCGCCUAGUA ...(((.((......)).)))-.(.(((((.........))))).)((((((.((((.....((((((...((((......)))).))))))..)))).....))))))...... ( -26.80, z-score = -0.40, R) >consensus _UAUCCCAUGCACCAGGCAAACAGAAAUGCCAGGAAGUGGCCA_ACGC___UCAUUUUGUUCCCAGCA_______________GACACCUU_CUGCUAAUUAUGAUCGCCUGGUG ..........((((((((..........((((.....))))...............(((....))).........................................)))))))) ( -9.76 = -9.58 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:30 2011