| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,023,163 – 4,023,215 |
| Length | 52 |
| Max. P | 0.906742 |
| Location | 4,023,163 – 4,023,215 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 92.31 |
| Shannon entropy | 0.13603 |
| G+C content | 0.61373 |
| Mean single sequence MFE | -19.06 |
| Consensus MFE | -17.80 |
| Energy contribution | -17.80 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.906742 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4023163 52 + 22422827 CGAGGGUGGCUCGAGCUUGGAGUUUGAAGGUCGAGACAUCGGCCGACAGACC ((((.....))))........(((((..((((((....))))))..))))). ( -18.80, z-score = -1.61, R) >droEre2.scaffold_4690 1399608 51 + 18748788 CGAGG-UGGCUCGAGCUUGGAGUUUGAAGGUCGAAAAAUCGGCCGACAGACC ((((.-...))))........(((((..((((((....))))))..))))). ( -18.00, z-score = -1.98, R) >droYak2.chrX 17364350 52 - 21770863 CGAGGGUGGCUCGAGCUUGGAGUUUGGAGGUCGAGACUUCGGCCGACAGACC ((((.....))))........(((((..(((((......)))))..))))). ( -19.10, z-score = -0.97, R) >droSec1.super_4 3480362 52 - 6179234 CGAGGGUGGCUCGAGCUUGGAGUUUGUAGGUCGAGGCAUCGGCCAACAGACC ((((.....))))........((((((.((((((....)))))).)))))). ( -19.70, z-score = -2.15, R) >droSim1.chrX 2996750 52 + 17042790 CGAGGGCGGCUCGAGCUUGGAGUUUGUAGGUCGAGGCAUCGGCCAACAGACC ((((.....))))........((((((.((((((....)))))).)))))). ( -19.70, z-score = -1.85, R) >consensus CGAGGGUGGCUCGAGCUUGGAGUUUGAAGGUCGAGACAUCGGCCGACAGACC ((((.....))))........(((((..((((((....))))))..))))). (-17.80 = -17.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:29 2011