Locus 13037

Sequence ID dm3.chrX
Location 4,002,221 – 4,002,307
Length 86
Max. P 0.925946
window17919

overview

Window 9

Location 4,002,221 – 4,002,307
Length 86
Sequences 4
Columns 88
Reading direction reverse
Mean pairwise identity 81.99
Shannon entropy 0.28944
G+C content 0.37973
Mean single sequence MFE -18.42
Consensus MFE -13.71
Energy contribution -13.53
Covariance contribution -0.19
Combinations/Pair 1.32
Mean z-score -2.10
Structure conservation index 0.74
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.32
SVM RNA-class probability 0.925946
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 4002221 86 - 22422827
UCAACAUUAUUUGGCCCGCCAAUCUUUGUUCUGAUAAUGCUGC--UGAAUUGCUCACAAUUCUUUAUCGGUACCAAAAUAACAGCAAU
..((((....((((....))))....)))).......(((((.--.((((((....))))))......(....).......))))).. ( -15.90, z-score =  -1.41, R)
>droSim1.chrX 2974687 88 - 17042790
UCAACAUUAUUUGGCCCGCUAAUCUUUGUUCUGAUAAUUCUGCUGUGAAUUGCUCACAAUUCUUUAUCGGGACCAAAAUAACAGCGGU
...............(((((....(((((((((((((......(((((.....))))).....))))))))).)))).....))))). ( -22.00, z-score =  -2.80, R)
>droYak2.chrX 17344197 86 + 21770863
UAAACAUUAUUUGGUUCGCUAGUCUUUGUUCUGAUAAUGCCAA--UGAAUUGGCCACAAUUCUUUAUCGGUACCAAAAUAACAGCGGU
...............(((((.((.((((..(((((((......--.((((((....)))))).)))))))...))))...))))))). ( -17.20, z-score =  -1.03, R)
>droEre2.scaffold_4690 1379029 75 - 18748788
-----------UGACUCGCUAAUCUUUGUCCUGAUAAUGCUGA--UGAAUUGCCCACAAUUCUUUAUCAGCACCAAAAUAACAGCGGU
-----------....(((((.(((........)))..((((((--(((((((....))))))...)))))))..........))))). ( -18.60, z-score =  -3.16, R)
>consensus
UCAACAUUAUUUGGCCCGCUAAUCUUUGUUCUGAUAAUGCUGA__UGAAUUGCCCACAAUUCUUUAUCGGUACCAAAAUAACAGCGGU
...............(((((.(((........)))..(((((....((((((....)))))).....)))))..........))))). (-13.71 = -13.53 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:26 2011