| Sequence ID | dm3.chrX |
|---|---|
| Location | 4,001,128 – 4,001,218 |
| Length | 90 |
| Max. P | 0.571089 |
| Location | 4,001,128 – 4,001,218 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 96.00 |
| Shannon entropy | 0.06971 |
| G+C content | 0.44889 |
| Mean single sequence MFE | -19.76 |
| Consensus MFE | -19.00 |
| Energy contribution | -18.68 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.571089 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 4001128 90 - 22422827 GCGGCUGCGUUUAGUCAUAUAUUCAAUUUCAAAAUCGCUGGAUAUUGGAUAUCCAAGUGACACAGCACCACGCCCAGCACAAUUCGCCAC (((((((....)))))....................(((((...((((....))))(((.........)))..))))).......))... ( -19.70, z-score = -1.00, R) >droEre2.scaffold_4690 1377808 90 - 18748788 GCGGCUGCGUUUAGUCAUAUAUUCAAUUUCAAAAUCGCUGGAUAUUGGAUAUUCAAGUGACACAGCACCACGCCCAGCUAAAUUCGCAAU (((((((.(((.......(((((((((((((.......)))).)))))))))......))).)))).....((...))......)))... ( -20.42, z-score = -1.23, R) >droYak2.chrX 17343037 90 + 21770863 GCGGCUGCGUUUAGUCAUAUAUUCAAUUUCAAAAUCGCUGGAUAUUGGAUAUCCAAGAGACAUAGCACCACGCCCAGCAAAAUUUGCAAC (((((((....)))))....................(((((...((((....))))........((.....))))))).......))... ( -19.30, z-score = -1.09, R) >droSec1.super_4 3458586 90 + 6179234 GCGGCUGCGUUUAGUCAUAUAUUCAAUUUCAAAAUCGCUGGAUAUUGGAUAUCCAAGUGACACAGCACCACGCCCAGCACAAUUCGCCAC (((((((....)))))....................(((((...((((....))))(((.........)))..))))).......))... ( -19.70, z-score = -1.00, R) >droSim1.chrX 2973472 90 - 17042790 GCGGCUGCGUUUAGUCAUAUAUUCAAUUUCAAAAUCGCUGGAUAUUGGAUAUCCAAGUGACACAGCACCACGCCCAGCACAAUUCGCCAC (((((((....)))))....................(((((...((((....))))(((.........)))..))))).......))... ( -19.70, z-score = -1.00, R) >consensus GCGGCUGCGUUUAGUCAUAUAUUCAAUUUCAAAAUCGCUGGAUAUUGGAUAUCCAAGUGACACAGCACCACGCCCAGCACAAUUCGCCAC (((((((.(((.......(((((((((((((.......)))).)))))))))......))).)))).....((...))......)))... (-19.00 = -18.68 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:25 2011