| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,945,002 – 3,945,135 |
| Length | 133 |
| Max. P | 0.991313 |
| Location | 3,945,002 – 3,945,135 |
|---|---|
| Length | 133 |
| Sequences | 6 |
| Columns | 148 |
| Reading direction | forward |
| Mean pairwise identity | 74.46 |
| Shannon entropy | 0.46216 |
| G+C content | 0.50192 |
| Mean single sequence MFE | -47.13 |
| Consensus MFE | -28.76 |
| Energy contribution | -29.93 |
| Covariance contribution | 1.18 |
| Combinations/Pair | 1.37 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.47 |
| SVM RNA-class probability | 0.991313 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3945002 133 + 22422827 GGAUCUUUGGCCGGGUUAGUGCGUGCCGGAUUUAUGACAAGGAGC-----UUCACG-GGU-UUUC----UUAAAGCACUCACCUACA---CCUUCGUUCCAUUCGAUUCGUUGUCCUGGGCAACCGGGACAUCGGCUGGCUAAAUGG- .....(((((((((((..(((.((((.(((.....(((..(....-----....).-.))-).))----)....)))).)))..)).---...(((.......))).(((.((((((((....)))))))).))))))))))))...- ( -44.00, z-score = -1.23, R) >droAna3.scaffold_13117 101810 143 - 5790199 UCUUGUUGCCCCAGGUAAGUGCGUGUGGGAUUUAUUACAUAAAGCACUUUUUUAUGCAAUGUCUCGCCCUUAAAAAAAAUAAUCAAA-----AAAAAAAAAGUAAAUCAGUUGUCACGGGAAACAAAAAAAUAAACCAUCGAAUUGCA ..(((((..(((......((((((((((......))))))...))))(((((((.((........))...)))))))..........-----.........................))).)))))...................... ( -20.00, z-score = 1.07, R) >droEre2.scaffold_4690 1316599 128 + 18748788 GGAUCUUUGGCCAGGUGAGUGCGUGUCGGAUUUAUGGCA-GAAGC-----UUCACG-GGUUUUUC----UUAAGGCACUCUCCUGCC---CCUCUGUUCCAUUGAAUUCGUUGUCCUGGGCAACCGGG----CGGC-GGCUAAAUGG- ........(((.(((.((((((.(((((......)))))-(((((-----(.....-))))))..----.....)))))).))))))---........(((((....((((((.(((((....)))))----))))-))...)))))- ( -48.40, z-score = -1.63, R) >droYak2.chrX 17284323 131 - 21770863 GGAUCUUUGGCCAGGUGAGUGCGUGUCGGAUUUAUGGCA-GGAGC-----UUCACG-GGUGUUUC----UUAAAGCACUCCUCUACCACUCCUCUGUUCCAUUCGAUUCGUUGUCCUGGGCAACCGGG----CAGC-GGCUAAAUGG- (((((..(((.((((.(((((.((((((......)))).-((((.-----.....(-(((((((.----...))))))))))))))))))).))))..)))...)))))((((.(((((....)))))----))))-..........- ( -47.80, z-score = -1.70, R) >droSec1.super_4 3402890 133 - 6179234 AGAUCUUUGGCCAGGUGAGUGCGUGCCGGAUUUAUGGCAAGGAGC-----UUCACG-GGC-UUUC----UUAAAGCACUCACCUACA---CCUCUUUCCCAUUCGAUUCGUUGUCCUGGGCAACCGGGACAGCGGUUGGCUAAAUGG- .....(((((((((((((((((.(((((......))))).(((((-----(.....-)))-))).----.....))))))))))...---.................((((((((((((....))))))))))))..)))))))...- ( -62.50, z-score = -5.62, R) >droSim1.chrX 2927082 133 + 17042790 GGAUCUUUGGCCAGGUGAGUGCGUGCCGGAUUUAUGGCAAGGAGC-----UUCACG-GGU-UUUC----UUAAAGCACUCACCUACA---CCUCUUUCCCAUUCGAUUCGUUGUCCUGGGCAACCGGGACAGCGGUUGGCUAAAUGG- .....(((((((((((((((((.(((((......))))).(((((-----(.....-)))-))).----.....))))))))))...---.................((((((((((((....))))))))))))..)))))))...- ( -60.10, z-score = -4.97, R) >consensus GGAUCUUUGGCCAGGUGAGUGCGUGCCGGAUUUAUGGCAAGGAGC_____UUCACG_GGU_UUUC____UUAAAGCACUCACCUACA___CCUCUGUUCCAUUCGAUUCGUUGUCCUGGGCAACCGGGACA_CGGCUGGCUAAAUGG_ .....(((((((((((((((((.(((((......))))).(((.......))).....................)))))))))).........................((((((((((....))))))...)))).))))))).... (-28.76 = -29.93 + 1.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:17 2011