| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,937,349 – 3,937,442 |
| Length | 93 |
| Max. P | 0.680109 |
| Location | 3,937,349 – 3,937,442 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 88.08 |
| Shannon entropy | 0.18726 |
| G+C content | 0.61718 |
| Mean single sequence MFE | -37.70 |
| Consensus MFE | -32.09 |
| Energy contribution | -32.52 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.680109 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3937349 93 + 22422827 GUCCGGCGUUUGGUCAGCACCGGAUAACGGCUGCAAGGGGUUGCUCUCCAUCCGGACAACGGACACUGGUCUGCGGACACUGGACUGCGGACU------- (((((..((((((...((((((.....))).)))..((((.....))))..))))))..)))))...(((((((((........)))))))))------- ( -42.00, z-score = -3.02, R) >droYak2.chrX 17276798 100 - 21770863 GUCCGGCGUUUGGUCAGCACCGGAUAACGGCUGCAAGGGGUUGCUCUCCAUGCGGACAGCGGACAACGGACACUGGGCUGUGGACUGUGGAGUUCGGACG ((((((.((((((((.((.(((.....)))(((((.((((.....)))).)))))...)).)))..))))).))))))..((((((....)))))).... ( -39.40, z-score = -0.85, R) >droSec1.super_4 3395411 93 - 6179234 GUCCGGCGUUUGGUCAGCACCGGAUAACGGCUGCAAGGGGUUGCUCUCCAUCCGGACAACGGACACUGGACUGCGGAUAUCGGACUGUGGACU------- (((((..((((((...((((((.....))).)))..((((.....))))..))))))..)))))......(..(((........)))..)...------- ( -34.70, z-score = -1.20, R) >droSim1.chrX 2919532 93 + 17042790 GUCCGGCGUUUGGUCAGCACCGGAUAACGGCUGCAAGGGGUUGCUCUCCAUCCGGACAACGGACACUGGACUGCGGACAUCGGACUGUGGACU------- (((((..((((((...((((((.....))).)))..((((.....))))..))))))..)))))......(..(((........)))..)...------- ( -34.70, z-score = -1.02, R) >consensus GUCCGGCGUUUGGUCAGCACCGGAUAACGGCUGCAAGGGGUUGCUCUCCAUCCGGACAACGGACACUGGACUGCGGACAUCGGACUGUGGACU_______ (((((..((((((...((((((.....))).)))..((((.....))))..))))))..)))))......((((((........)))))).......... (-32.09 = -32.52 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:15 2011