| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,911,737 – 3,911,790 |
| Length | 53 |
| Max. P | 0.741952 |
| Location | 3,911,737 – 3,911,790 |
|---|---|
| Length | 53 |
| Sequences | 12 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 91.85 |
| Shannon entropy | 0.16878 |
| G+C content | 0.45312 |
| Mean single sequence MFE | -13.33 |
| Consensus MFE | -10.93 |
| Energy contribution | -10.70 |
| Covariance contribution | -0.23 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.741952 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3911737 53 - 22422827 UUGGAACGAAUGGCGGUAAUGACUUUUCAUUCUCGCCC--------AAGAUAACGCCAACA ((((.......((((..(((((....)))))..)))).--------.........)))).. ( -12.93, z-score = -1.74, R) >droSim1.chrX_random 1534336 53 - 5698898 UUGGAACGAAUGGCGGUAAUGACUUUUCAUUCUCGCCC--------AAGAUAACGCCAACA ((((.......((((..(((((....)))))..)))).--------.........)))).. ( -12.93, z-score = -1.74, R) >droSec1.super_4 3370453 53 + 6179234 UUGGAACGAAUGGCGGUAAUGACUUUUCAUUCUCGCCC--------AAGAUAACGCCAACA ((((.......((((..(((((....)))))..)))).--------.........)))).. ( -12.93, z-score = -1.74, R) >droYak2.chrX 17251523 53 + 21770863 UUGGAACGAAUGGCGGUAAUGACUUUUCAUUCUCGCCC--------AAGAUAAUGCCAACA ((((.......((((..(((((....)))))..)))).--------.........)))).. ( -12.93, z-score = -1.69, R) >droEre2.scaffold_4690 1282194 53 - 18748788 UCGGAACGAAUGGCGGUAAUGACUUUUCAUUCUCGCCC--------AAGAUAACGCCAACA ..((.......((((..(((((....)))))..)))).--------.........)).... ( -11.93, z-score = -1.21, R) >droAna3.scaffold_13117 43285 53 + 5790199 UUGGAACGAAUGGCGGUAAUGACUUUUCAUUCUCGCCC--------AAGAUAACGCCAACA ((((.......((((..(((((....)))))..)))).--------.........)))).. ( -12.93, z-score = -1.74, R) >dp4.chrXL_group1e 741024 53 + 12523060 UCGGAACGAAUGGCGGUAAUGACUUUUCAUUCUCGCCC--------AAGAUAACGCCAACG ..((.......((((..(((((....)))))..)))).--------.........)).... ( -11.93, z-score = -1.09, R) >droPer1.super_12436 247 53 - 693 UCGGAACGAAUGGCGGUAAUGACUUUUCAUUCUCGCCC--------AAGAUAACGCCAACG ..((.......((((..(((((....)))))..)))).--------.........)).... ( -11.93, z-score = -1.09, R) >droWil1.scaffold_180588 94075 61 + 1294757 UUGGGAUGAAUGGCGGUAAUGACUUUUUAUUCCCGCUCUUCUUGCUCAGAUAACGCCAACA (((((..(((.(((((.(((((....))))).))))).)))...)))))............ ( -16.70, z-score = -2.23, R) >droMoj3.scaffold_6328 2169623 52 - 4453435 UUGGAACGAAUGGCGGUAAUGACUUUUCAUUCUCGCCU---------AGAUAACGCCAAAA ((((.......((((..(((((....)))))..)))).---------........)))).. ( -14.49, z-score = -2.70, R) >droVir3.scaffold_12928 6494380 51 - 7717345 UUGGAACGAAUGGCGGUAAUGACUUUUCAUUCUCGCCU---------AGAUAACGCCAAA- ((((.......((((..(((((....)))))..)))).---------........)))).- ( -14.49, z-score = -2.71, R) >droGri2.scaffold_14853 2793673 52 + 10151454 UUGGAACGAAUGGCGGUAAUGACUUUUCAUUCUCGCCC---------AGAUAACGCCAAAA ((((.......((((..(((((....)))))..)))).---------........)))).. ( -13.79, z-score = -2.08, R) >consensus UUGGAACGAAUGGCGGUAAUGACUUUUCAUUCUCGCCC________AAGAUAACGCCAACA ...........(((((.(((((....))))).)))))........................ (-10.93 = -10.70 + -0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:12 2011