| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,909,527 – 3,909,613 |
| Length | 86 |
| Max. P | 0.997050 |
| Location | 3,909,527 – 3,909,613 |
|---|---|
| Length | 86 |
| Sequences | 5 |
| Columns | 87 |
| Reading direction | forward |
| Mean pairwise identity | 76.38 |
| Shannon entropy | 0.42653 |
| G+C content | 0.51365 |
| Mean single sequence MFE | -24.98 |
| Consensus MFE | -17.20 |
| Energy contribution | -19.44 |
| Covariance contribution | 2.24 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.03 |
| SVM RNA-class probability | 0.997050 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3909527 86 + 22422827 UUAGUGCUCGAAACUAGCUGGCAAGGACAAAGUCCUGCCAGCAGCGGACGAGCACGUUCCACUGCCCCCACCAUA-AUUUGACAUUG ...(((((((...((.(((((((.((((...)))))))))))))....)))))))....................-........... ( -31.10, z-score = -4.01, R) >droSec1.super_4 3368384 87 - 6179234 UUAGUGCUCGAAACUAGCUGGCAAGGACAAAGUCCUGCCAGCUGCGGACGAGCACGUUCCACUGCCCCCACCGAACAUUUGACAUUG ...(((((((...((((((((((.((((...))))))))))))).)..)))))))((((...((....))..))))........... ( -35.30, z-score = -4.96, R) >droYak2.chrX 17249464 81 - 21770863 UUAGUGUCCUUAG-----UGGCAAGGACAAAGUCCUGCCAGCAGCGGACGAGCACGUUCCACUACCCCCUUCUAAAAUUUC-UAUUG .(((((.......-----(((((.((((...))))))))).....(((((....)))))))))).................-..... ( -20.10, z-score = -1.54, R) >droEre2.scaffold_4690 1280100 86 + 18748788 UUAGUGCUCCAAACUAGCUGGCAAGGACAAAGUCCUGCCAGCAGCGGACAAGCACGUUCCACUACCCUCACCUUAAUUUUC-CAUUG ...(((((((...((.(((((((.((((...))))))))))))).)))...))))..........................-..... ( -26.20, z-score = -3.61, R) >droAna3.scaffold_13117 41151 82 - 5790199 UUACAGCUCAAAACUAGCCAG-AAAGACAAAGUCCUUGGAGCAGCCAGGAAGCACGUUCCAUUCCAGCCACCUAG--UGCCAUAU-- ............(((((....-...(((...)))..((((((.((......))..))))))..........))))--).......-- ( -12.20, z-score = 0.55, R) >consensus UUAGUGCUCGAAACUAGCUGGCAAGGACAAAGUCCUGCCAGCAGCGGACGAGCACGUUCCACUACCCCCACCUAA_AUUUCACAUUG ...((((((.......(((((((.((((...))))))))))).......))))))................................ (-17.20 = -19.44 + 2.24)
| Location | 3,909,527 – 3,909,613 |
|---|---|
| Length | 86 |
| Sequences | 5 |
| Columns | 87 |
| Reading direction | reverse |
| Mean pairwise identity | 76.38 |
| Shannon entropy | 0.42653 |
| G+C content | 0.51365 |
| Mean single sequence MFE | -31.88 |
| Consensus MFE | -20.24 |
| Energy contribution | -21.12 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.35 |
| SVM RNA-class probability | 0.989002 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3909527 86 - 22422827 CAAUGUCAAAU-UAUGGUGGGGGCAGUGGAACGUGCUCGUCCGCUGCUGGCAGGACUUUGUCCUUGCCAGCUAGUUUCGAGCACUAA ((.((((..((-....))...)))).))....(((((((...((((((((((((((...)))).))))))).)))..)))))))... ( -37.00, z-score = -3.39, R) >droSec1.super_4 3368384 87 + 6179234 CAAUGUCAAAUGUUCGGUGGGGGCAGUGGAACGUGCUCGUCCGCAGCUGGCAGGACUUUGUCCUUGCCAGCUAGUUUCGAGCACUAA .....((...(((((.....)))))...))..(((((((...((((((((((((((...)))).)))))))).))..)))))))... ( -38.60, z-score = -3.54, R) >droYak2.chrX 17249464 81 + 21770863 CAAUA-GAAAUUUUAGAAGGGGGUAGUGGAACGUGCUCGUCCGCUGCUGGCAGGACUUUGUCCUUGCCA-----CUAAGGACACUAA ...((-(...((((((.....(((((((((.((....)))))))))))((((((((...)))).)))).-----))))))...))). ( -29.30, z-score = -2.65, R) >droEre2.scaffold_4690 1280100 86 - 18748788 CAAUG-GAAAAUUAAGGUGAGGGUAGUGGAACGUGCUUGUCCGCUGCUGGCAGGACUUUGUCCUUGCCAGCUAGUUUGGAGCACUAA .....-.........((((.....((((((.((....))))))))(((((((((((...)))).)))))))..........)))).. ( -29.10, z-score = -1.42, R) >droAna3.scaffold_13117 41151 82 + 5790199 --AUAUGGCA--CUAGGUGGCUGGAAUGGAACGUGCUUCCUGGCUGCUCCAAGGACUUUGUCUUU-CUGGCUAGUUUUGAGCUGUAA --.((((((.--(.((.((((..(((((((.((.(((....))))).)))).((((...))))))-)..)))).))..).)))))). ( -25.40, z-score = -1.01, R) >consensus CAAUGUGAAAU_UUAGGUGGGGGCAGUGGAACGUGCUCGUCCGCUGCUGGCAGGACUUUGUCCUUGCCAGCUAGUUUCGAGCACUAA ................................((((((.......(((((((((((...)))).))))))).......))))))... (-20.24 = -21.12 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:11 2011