| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,903,753 – 3,903,840 |
| Length | 87 |
| Max. P | 0.818744 |
| Location | 3,903,753 – 3,903,840 |
|---|---|
| Length | 87 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 73.82 |
| Shannon entropy | 0.48819 |
| G+C content | 0.40773 |
| Mean single sequence MFE | -19.73 |
| Consensus MFE | -10.68 |
| Energy contribution | -11.11 |
| Covariance contribution | 0.43 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.818744 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3903753 87 + 22422827 GUUGCCAUUAGCUGCAACUAAUAGGAAACAUAACUAUAAAUAAUUGGCAAUUGGAAUGCGGUUGUUGAUGGGAAGGGAAGGUAGUGG---------------- ....((((((.((....((....(....).............((..(((((((.....)))))))..))....))...)).))))))---------------- ( -19.60, z-score = -1.59, R) >droSim1.chrX 2897326 82 + 17042790 GUUGCCAUUAGCUGCAACUAAUAGGAAACAUAACUAUAAAUAAUUGGCAAUUGGAAUGCGGUUGUUGAAUGGCUGGUGGUGG--------------------- .(..(((((((((..........(....)..............(..(((((((.....)))))))..)..)))))))))..)--------------------- ( -25.10, z-score = -3.25, R) >droSec1.super_4 3362701 82 - 6179234 GUUGCCAUUAGCUGCAACUAAUAGGAAACAUAACUAUAAAUAAUUGGCAAUUGGAAUGCGGUUGUUGAAUGGGUGGUGGUGG--------------------- .(..((((((.((..........(....)..............(..(((((((.....)))))))..)..)).))))))..)--------------------- ( -20.60, z-score = -1.77, R) >droYak2.chrX 17243882 73 - 21770863 GUUGCCAUUAGCUGCAACUAAUAGGAAACAUAACUAUAAAUAAUUGCCAAUUGGAAUGCGGUUGGCGAGGAGG------------------------------ (((((........))))).....(....)..............((((((((((.....)))))))))).....------------------------------ ( -18.80, z-score = -1.97, R) >droEre2.scaffold_4690 1274337 80 + 18748788 GUUGCCAUUAGCUGCAACUAAUAGGAAACAUAACUAUAAAUAAUUGGCAAUUGGAAUGCGGUUGAUGAGGAGGUGAGGAG----------------------- .((.((((((((((((.(((((.(....)....(((........)))..)))))..))))))))))).).))........----------------------- ( -18.20, z-score = -2.08, R) >dp4.chrXL_group1e 733191 86 - 12523060 GUUGCCAUUAGCUGCAACUAAUAGGAAACAUAACUAUAAAUAAUUGGCAAUUGGACUGCGGUGGCGAUGGCGAUGGCGAUGGCGGG----------------- (((((((((.((((((.(((((.(....)....(((........)))..)))))..))))))...))))))))).((....))...----------------- ( -24.30, z-score = -1.86, R) >droWil1.scaffold_180588 85907 103 - 1294757 GUUACCACUGUGUGCAACUAAUAGGCAACAUAACUAUAAAUAAUUGGCCAAAGGAAUGCGUUUAGCGGAGAAUGAAAUAAAAUGAAAAUGGGAAAGUUGGAUG ....((.(((..((((.......(((....................))).......))))..))).))................................... ( -11.49, z-score = 1.71, R) >consensus GUUGCCAUUAGCUGCAACUAAUAGGAAACAUAACUAUAAAUAAUUGGCAAUUGGAAUGCGGUUGUUGAAGAGGUGGGGAUGG_____________________ (((((........))))).....(....)..............((((((((((.....))))))))))................................... (-10.68 = -11.11 + 0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:08 2011