| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,966,959 – 9,967,061 |
| Length | 102 |
| Max. P | 0.561415 |
| Location | 9,966,959 – 9,967,061 |
|---|---|
| Length | 102 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 82.73 |
| Shannon entropy | 0.34892 |
| G+C content | 0.38744 |
| Mean single sequence MFE | -21.34 |
| Consensus MFE | -13.69 |
| Energy contribution | -14.21 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.561415 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9966959 102 + 23011544 -------CGUGUAUUAGCGCGCAAUUUCUCGAUUAUAGAUAG--ACGGUUCAAUAGUCAAUAGUUUUUU---AUCUGUAUCAGAA---GUACAGUUCAGAGUUGCCACGCGACACGC- -------(((((....(((.(((((((...((((((.((...--.....)).))))))...........---..((((((.....---))))))....)))))))..))).))))).- ( -26.10, z-score = -2.15, R) >droSim1.chr2L 9757871 102 + 22036055 -------CGUGUAUUAGCGCGCAAUUUCUCGAUUAUAGAUAG--ACGGUUCAAUAGUCAAUAGUUUUUU---AUCUGUAUCAGAA---GUACAGUUCAGAGUUGCCACGCGACACGC- -------(((((....(((.(((((((...((((((.((...--.....)).))))))...........---..((((((.....---))))))....)))))))..))).))))).- ( -26.10, z-score = -2.15, R) >droSec1.super_3 5413648 102 + 7220098 -------CGUGUAUUAGCGCGCAAUUUCUCGAUUAUAGAUAG--ACGGUUCAAUAGUCAAUAGUUUUUU---AUCUGUAUCAGAA---GUACAGUUCAGAGUUGCCACGCGACACGC- -------(((((....(((.(((((((...((((((.((...--.....)).))))))...........---..((((((.....---))))))....)))))))..))).))))).- ( -26.10, z-score = -2.15, R) >droYak2.chr2L 12657649 102 + 22324452 -------CGGGAAUUAGCGCGCAAUUUCUCGAUUAUAGAUAG--ACAGUUCAAUAGUCAAUAGUUUUUU---AUCUGUAUCAGAA---GUACAGUUUAGAGUUGCCACGCGACACGC- -------.........(((.(((((((...((((((.((...--.....)).))))))...........---..((((((.....---))))))....)))))))..))).......- ( -20.50, z-score = -0.71, R) >droEre2.scaffold_4929 10587229 102 + 26641161 -------CGGGAAUUAGCGCGCAAUUUCUCGAUUAUAGAUAG--ACGGUUCAAUAGUCAAUAGUUUUUU---AUCUGUAUCAGAG---GUACAGUUUAGAGUUGCCACGCGACACAC- -------.........(((.(((((((...((((((.((...--.....)).))))))...........---..((((((.....---))))))....)))))))..))).......- ( -22.00, z-score = -1.19, R) >droAna3.scaffold_12916 13806308 94 + 16180835 --------CAGAAUUACCGCGCAAUUUUCCGAUUAUAGAUAG--A--------UCGUCAAUAGUUUUU----AUCUGUAUCAGAAA--GUACAGUUCAGAGUUGCCACGCGACACCAC --------.........(((((((((((..(((.((((((((--(--------............)))----))))))))).(((.--......)))))))))))...)))....... ( -17.80, z-score = -1.85, R) >dp4.chr4_group3 11488634 91 - 11692001 ----------CGAGAAGCGCGCAAUUUCUCGAUUAUAGAUAG--A--------UAGUCAAUAGUUUUUU---AUCUGUAUCAGAA---GUACAGUACAGAGUUGCCACGCGACACGG- ----------((.(..(((.(((((((...((((((......--)--------)))))...........---..((((((.....---))))))....)))))))..)))..).)).- ( -20.50, z-score = -1.32, R) >droPer1.super_1 8604760 91 - 10282868 ----------CGAGAAGCGCGCAAUUUCUCGAUUAUAGAUAG--A--------UAGUCAAUAGUUUUUU---AUCUGUAUCAGAA---GUACAGUACAGAGUUGCCACGCGACACGG- ----------((.(..(((.(((((((...((((((......--)--------)))))...........---..((((((.....---))))))....)))))))..)))..).)).- ( -20.50, z-score = -1.32, R) >droWil1.scaffold_180708 12273351 113 + 12563649 CGCUUAAGAAAAAUAAGCGCGCAAUUUCUCGAUUAUAGAUAGUCACAAACCAAUAGUCAAUAGUUUUCUUUUUUUUUUAUCAGAAAAAGUACAGUUAGG----GUCAAUCGAUAAAG- ((((((.......)))))).....(((.((((((...(((...............)))....((...((((((((......)))))))).)).......----...)))))).))).- ( -14.36, z-score = -0.07, R) >droVir3.scaffold_12723 1823889 106 - 5802038 -------AAAAAAUAAGCGCGCAAUUUCUCGAUUAUAGAUAG--UCAGUUCAAUAGUCAAUAGUUUUUUUU-AUCUGUAUCAGAAA--GUACAGUUUAGAGUUGCCACGCGACAGAGU -------.........(((.(((((((...((((((.((...--.....)).)))))).............-..((((((......--))))))....)))))))..)))........ ( -20.70, z-score = -1.81, R) >droMoj3.scaffold_6500 14749603 104 + 32352404 -------AAAAAAUAAGCGCGCAAUUUCUCGAUUAUAGAUAG--UCAGUUCAAUAGUCAAUAGUUUUUU---AUCUGUAUCAGAAA--GUACAGUUCAGAGUUGCCACGCGACAGAGU -------.........(((.(((((((...((((((.((...--.....)).))))))...........---..((((((......--))))))....)))))))..)))........ ( -20.70, z-score = -1.99, R) >droGri2.scaffold_15252 3679655 104 + 17193109 -------AAUAAAUAAGCGCGCAAUUUCUCGAUUAUAGAUAG--UCAGUUCAAUAGUCAAUAGUUUUUU---AUCUGUAUCAGAAA--GUACAGUUCAGAGUUGCCACGCGACAGAGU -------.........(((.(((((((...((((((.((...--.....)).))))))...........---..((((((......--))))))....)))))))..)))........ ( -20.70, z-score = -1.90, R) >consensus _______CGAGAAUAAGCGCGCAAUUUCUCGAUUAUAGAUAG__ACAGUUCAAUAGUCAAUAGUUUUUU___AUCUGUAUCAGAA___GUACAGUUCAGAGUUGCCACGCGACACGG_ ................(((.(((((((...((((((.(((...............))).)))))).........((((((........))))))....)))))))..)))........ (-13.69 = -14.21 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:21 2011