| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,869,911 – 3,870,005 |
| Length | 94 |
| Max. P | 0.603551 |
| Location | 3,869,911 – 3,870,005 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 83.91 |
| Shannon entropy | 0.28535 |
| G+C content | 0.51994 |
| Mean single sequence MFE | -34.54 |
| Consensus MFE | -24.94 |
| Energy contribution | -25.54 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.603551 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3869911 94 + 22422827 GAUUGCCGGCUGCGGAUUACGCGCCAGUGCAUUCGAAUGCCUGGCAUUUUGCAUUGCCAACAAUCACAACAAUUGGCCAAC---CAACAA-GCAGCAG-------------- (((((..(((.(((.....)))(((((.((((....)))))))))..........)))..))))).......((((....)---)))...-.......-------------- ( -30.10, z-score = -1.41, R) >droSim1.chrX_random 1520803 108 + 5698898 GAUUGCCGGCUGCGGAUUACGCGCCAGUGCAUCCGAAUGCCUGGCAUUUUGCAUUGCCAACAAUCACAACAAUUGGCCAAC---CAACAA-GCAGCAGCUAGCAGCCAGCAG ...(((.((((((((.......(((((.((((....)))))))))..........(((((............)))))...)---)....(-((....))).)))))).))). ( -38.90, z-score = -2.28, R) >droSec1.super_4 3331244 108 - 6179234 GAUUGCCGGCUGCGGAUUACGCGCCAGUGCAUUCGAAUGCCUGGCAUUUUGCAUUGCCAACAAUCACAACAAUUGGCCAAC---CAACAA-GCAGCAGCUAGCAGCCAGCAG ...(((.((((((((.......(((((.((((....)))))))))..........(((((............)))))...)---)....(-((....))).)))))).))). ( -39.00, z-score = -2.32, R) >droYak2.chrX 17217506 111 - 21770863 GAUUGCCGGCUGCGGAUUACGCGCCAGUGCAUUCGAAUGCCUGGCAUUUUGCAUUGCCAACAAUCACAACAAUUGGACAACAACCAGUAG-CGAGCAGCUAGUAGCUAGCAA (((((..(((.(((.....)))(((((.((((....)))))))))..........)))..)))))......(((((.......))))).(-(.(((........))).)).. ( -36.70, z-score = -1.69, R) >droAna3.scaffold_13117 960 106 - 5790199 GAUUGCCGGCUGCGGAUUACGCGCGAGUGCAUCCGAAUGCCAGGCAUUU-GCAUUGCCAACAAUAAUAACAAUGGGCUAAAAAACAGAACCGGAGCAGC-AACAACAA---- ....((((((..(((((..(((....))).)))))...))).((((...-....))))................)))......................-........---- ( -28.00, z-score = -0.31, R) >consensus GAUUGCCGGCUGCGGAUUACGCGCCAGUGCAUUCGAAUGCCUGGCAUUUUGCAUUGCCAACAAUCACAACAAUUGGCCAAC___CAACAA_GCAGCAGCUAGCAGCCAGCA_ (((((..(((.(((.....)))(((((.((((....)))))))))..........)))..)))))............................................... (-24.94 = -25.54 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:13:01 2011