| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,842,270 – 3,842,381 |
| Length | 111 |
| Max. P | 0.607454 |
| Location | 3,842,270 – 3,842,381 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 84.36 |
| Shannon entropy | 0.25673 |
| G+C content | 0.28843 |
| Mean single sequence MFE | -20.02 |
| Consensus MFE | -13.64 |
| Energy contribution | -14.04 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.516617 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3842270 111 + 22422827 AUCAGAAUAAUUUGAUAUCAGAUUAUUUUACAACUUUGUAUGUCCUUUAAAAGGACGACUGUAUGCACAUAACAAAUGUACCACUACCAUGCAAAUUU-UUUGUCUUACUAA ...(((((((((((....)))))))))))((((.((((((((((((.....)))))....(((((.((((.....))))..)).))).)))))))...-.))))........ ( -20.30, z-score = -2.18, R) >droSim1.chrX 2852033 104 + 17042790 AUCAGAAUAAUUUGAUAUCAGAUUAUUU-ACAACAUUGUAUGUCCUUCAAAAGGACGACUGUAUGCACAUAAGAUAUGUACUACUACCAUGAAAAAUUGUUUGUC------- ....((((((((((....))))))))))-....(((.(((((((((.....))))))...(((.(.(((((...))))).))))))).)))..............------- ( -19.50, z-score = -1.01, R) >droSec1.super_807 2620 104 + 6834 AUCAGAAUAAUUUGAUAUCAGAUUAUUU-ACAACUUUGUAUGUCCUUCAAAAGGACGACUGUAUGCACAUAAGAUAUGUACUACUACCAUGAAAAAUUGUUUGUC------- ....((((((((((....))))))))))-((((.(((((.((((((.....)))))))).(((.(.(((((...))))).))))........))).)))).....------- ( -18.00, z-score = -0.60, R) >droYak2.chrX 17190420 104 - 21770863 ACCGUAAUAAUUUGUUAUCGAAUCAUUUUACAACUUUGUAUGCCCUUUAAAAGGGCGACUUUAUGUACAUAACAUAUGUAAUAAUACAACGAAAAUUU-GUUGUC------- ...((((..(((((....)))))....))))......((.((((((.....)))))))).((((.((((((...)))))))))).(((((((....))-))))).------- ( -19.50, z-score = -1.58, R) >droEre2.scaffold_4690 1217817 104 + 18748788 AUCAUAAUAAUUUGAUAUCAAAUUAUUUUACAACUUUGUAUGUCCUUCAAAAGGACGACUUUAUGUACAGAACAUAUGUAAUAAUACAACGAAAAUUC-GUUGCC------- .....(((((((((....)))))))))(((((.....((.((((((.....))))))))..(((((.....)))))))))).....((((((....))-))))..------- ( -22.80, z-score = -3.57, R) >consensus AUCAGAAUAAUUUGAUAUCAGAUUAUUUUACAACUUUGUAUGUCCUUCAAAAGGACGACUGUAUGCACAUAACAUAUGUACUACUACCAUGAAAAUUU_UUUGUC_______ ...(((((((((((....)))))))))))........(((((((((.....)))))).........((((.....)))).....)))......................... (-13.64 = -14.04 + 0.40)
| Location | 3,842,270 – 3,842,381 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 84.36 |
| Shannon entropy | 0.25673 |
| G+C content | 0.28843 |
| Mean single sequence MFE | -21.72 |
| Consensus MFE | -15.36 |
| Energy contribution | -14.64 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.607454 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3842270 111 - 22422827 UUAGUAAGACAAA-AAAUUUGCAUGGUAGUGGUACAUUUGUUAUGUGCAUACAGUCGUCCUUUUAAAGGACAUACAAAGUUGUAAAAUAAUCUGAUAUCAAAUUAUUCUGAU ((((....((((.-...((((...((..(((((((((.....)))))).)))..))(((((.....)))))...)))).))))..((((((.((....)).)))))))))). ( -21.10, z-score = -1.05, R) >droSim1.chrX 2852033 104 - 17042790 -------GACAAACAAUUUUUCAUGGUAGUAGUACAUAUCUUAUGUGCAUACAGUCGUCCUUUUGAAGGACAUACAAUGUUGU-AAAUAAUCUGAUAUCAAAUUAUUCUGAU -------.............(((..(((((.(((((((...)))))))...(((..(((((.....))))).((((....)))-)......))).......)))))..))). ( -20.10, z-score = -0.95, R) >droSec1.super_807 2620 104 - 6834 -------GACAAACAAUUUUUCAUGGUAGUAGUACAUAUCUUAUGUGCAUACAGUCGUCCUUUUGAAGGACAUACAAAGUUGU-AAAUAAUCUGAUAUCAAAUUAUUCUGAU -------.....((((((((....((..((((((((((...))))))).)))..))(((((.....)))))....))))))))-.((((((.((....)).))))))..... ( -22.00, z-score = -1.87, R) >droYak2.chrX 17190420 104 + 21770863 -------GACAAC-AAAUUUUCGUUGUAUUAUUACAUAUGUUAUGUACAUAAAGUCGCCCUUUUAAAGGGCAUACAAAGUUGUAAAAUGAUUCGAUAACAAAUUAUUACGGU -------.(((((-........)))))....((((((((((.....))))).....(((((.....))))).........)))))(((((((........)))))))..... ( -19.40, z-score = -1.36, R) >droEre2.scaffold_4690 1217817 104 - 18748788 -------GGCAAC-GAAUUUUCGUUGUAUUAUUACAUAUGUUCUGUACAUAAAGUCGUCCUUUUGAAGGACAUACAAAGUUGUAAAAUAAUUUGAUAUCAAAUUAUUAUGAU -------.(((((-((....)))))))....((((((((((.....))))).....(((((.....))))).........)))))(((((((((....)))))))))..... ( -26.00, z-score = -3.63, R) >consensus _______GACAAA_AAAUUUUCAUGGUAGUAGUACAUAUGUUAUGUGCAUACAGUCGUCCUUUUGAAGGACAUACAAAGUUGUAAAAUAAUCUGAUAUCAAAUUAUUCUGAU ........((((................(((((((((.....)))))).)))....(((((.....)))))........))))..((((((.((....)).))))))..... (-15.36 = -14.64 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:59 2011