| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,838,090 – 3,838,141 |
| Length | 51 |
| Max. P | 0.611110 |
| Location | 3,838,090 – 3,838,141 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 89.78 |
| Shannon entropy | 0.17085 |
| G+C content | 0.32424 |
| Mean single sequence MFE | -9.10 |
| Consensus MFE | -7.70 |
| Energy contribution | -7.30 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.611110 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3838090 51 + 22422827 AUCAGAUUAUUUUACAACUUUGUAUGUCCUUUAAAAGGGCGACUGUAUGCA ..(((.......((((....))))((((((.....)))))).)))...... ( -8.60, z-score = -0.91, R) >droEre2.scaffold_4690 1217833 51 + 18748788 AUCAAAUUAUUUUACAACUUUGUAUGUCCUUCAAAAGGACGACUUUAUGUA ............((((.....((.((((((.....))))))))....)))) ( -8.20, z-score = -1.74, R) >droYak2.chrX 17190436 51 - 21770863 AUCGAAUCAUUUUACAACUUUGUAUGCCCUUUAAAAGGGCGACUUUAUGUA ............((((.....((.((((((.....))))))))....)))) ( -10.30, z-score = -2.20, R) >droSec1.super_4 3303871 50 - 6179234 AUCAGAUUAUUU-ACAACUUUGUAUGUCCUUCAAAAGGACGACUGUAUGCA ..(((......(-(((....))))((((((.....)))))).)))...... ( -9.20, z-score = -1.37, R) >droSim1.chrX 2852049 50 + 17042790 AUCAGAUUAUUU-ACAACAUUGUAUGUCCUUCAAAAGGACGACUGUAUGCA ..(((......(-(((....))))((((((.....)))))).)))...... ( -9.20, z-score = -1.26, R) >consensus AUCAGAUUAUUUUACAACUUUGUAUGUCCUUCAAAAGGACGACUGUAUGCA .....................((.((((((.....))))))))........ ( -7.70 = -7.30 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:57 2011