| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,834,915 – 3,835,023 |
| Length | 108 |
| Max. P | 0.973486 |
| Location | 3,834,915 – 3,835,023 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 58.96 |
| Shannon entropy | 0.76422 |
| G+C content | 0.38530 |
| Mean single sequence MFE | -21.20 |
| Consensus MFE | -7.65 |
| Energy contribution | -8.07 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.973486 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3834915 108 + 22422827 -----CAAAGCGAAAUUUUUUGUUGUAGGGACAUUUUCAUUUUCAAAAAAUAUUCCUUGCACGCAAGAUAAUCGGUACGCACCGGUAAACUAUCGAU--UUUCGAUAGUCAUCUG -----............((((((((((((((.(((((.........)))))..)))))))).))))))..((((((....))))))..(((((((..--...)))))))...... ( -26.30, z-score = -2.99, R) >droEre2.scaffold_4690 1214612 90 + 18748788 --------------------UUUAGUCGAGACUUCUUCAUUUUCAAAAA---CUCCUUGCACUGAAGCUUAUCGGUGCGCACCGCCUAUCUAUCGAU--UGUUGAUAGUCACUCG --------------------......((((...................---......(((((((......)))))))...........(((((((.--..)))))))...)))) ( -18.30, z-score = -1.20, R) >droYak2.chrX 17187246 81 - 21770863 -----------------------------UCCACACACAUUUUCAAAAA---UUCCUGACAAGGAAGCGUAUCGAUUCGCACCGGCUAGCUAUCGAU--UUUCGAUAGUCACUUG -----------------------------.((.................---(((((....)))))(((........)))...))...(((((((..--...)))))))...... ( -18.10, z-score = -2.51, R) >droSec1.super_807 3861 108 + 6834 -----CAAAACGAAAUUUUCUGUUGUUGGGACAUAUUCAUUUUCAAAAAAUUUUCUUCGCACGCAAGAUAAUCGGUACGCACCGGUAAACUAUCGAU--UCUUGAUAGUCAUCUG -----......((((((((.((....((((.....))))....)).))))))))...........((((.((((((....))))))..((((((((.--..)))))))).)))). ( -17.40, z-score = -0.11, R) >droSim1.chrX 2848869 107 + 17042790 -----CAAAGCGAAAUAUU-UGUUGUCGGGACAUAUUCAUUUUCAAAAAAUAUUCUUUGCACGCAAGAUAAUCGGUACGCACCGGUAAACUAUCGAU--UCUUGAUAGUCAUCUG -----....((((((((((-(.(((....((.....)).....))).))))))..))))).....((((.((((((....))))))..((((((((.--..)))))))).)))). ( -21.10, z-score = -1.18, R) >droGri2.scaffold_15245 6763771 114 + 18325388 CAGAAGGGAAAAAAUGGCGAUAAUUGCGCGCCAAAUGAAUAUCGUACACUAUCGCAAUAAAAUAUCGAUAGAAGUUAAAAAACAA-AAACAAUCGAUGGUUACGAUAUUGGCUCG .....(((......(((((.........)))))..(.(((((((((.(((((((..........((....)).(((....)))..-.......)))))))))))))))).)))). ( -26.00, z-score = -2.84, R) >consensus _____CAAA_CGAAAU_UU_UGUUGUCGGGACAUAUUCAUUUUCAAAAAAU_UUCCUUGCACGCAAGAUAAUCGGUACGCACCGGUAAACUAUCGAU__UUUCGAUAGUCACCUG ........................................................................((((....))))....((((((((.....))))))))...... ( -7.65 = -8.07 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:56 2011