| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,830,413 – 3,830,482 |
| Length | 69 |
| Max. P | 0.941686 |
| Location | 3,830,413 – 3,830,482 |
|---|---|
| Length | 69 |
| Sequences | 6 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 65.38 |
| Shannon entropy | 0.66915 |
| G+C content | 0.54333 |
| Mean single sequence MFE | -16.80 |
| Consensus MFE | -8.85 |
| Energy contribution | -9.93 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.941686 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3830413 69 + 22422827 UACCAUUUAAGCAUUAGCUUUUGCUUUGCCGGCCGUUAGGCAGCCGCGUCUAUUGCCCUCCAACGCAAU- ........((((....))))((((.(((..(((...(((((......)))))..)))...))).)))).- ( -16.30, z-score = -0.33, R) >droSim1.chrX 2841669 70 + 17042790 UACCUUUUAAACUCAAGCAUUUGCUUCGCCGGGCGAUAGGCAGUCGCGCCUAUUGCAUGCCACCACCAAA ..............((((....)))).((...(((((((((......)))))))))..)).......... ( -19.20, z-score = -1.47, R) >droSec1.super_4 3300413 70 - 6179234 UACCUUUUAAACUUAAGCAUUUGCUUCGCCGGGCGAUAGGCAGUCGCGUCUAUUGCACGCCACCACCAAA ..............((((....)))).(.((.(((((((((......))))))))).)).)......... ( -16.70, z-score = -0.72, R) >droYak2.chrX 17187048 65 - 21770863 UACUUU----ACUUUAGCUUUUGCUUCGCCGGCCGAUAGGCAACCGCGUCUAUCGCCCGCCACCCCCGC- ......----.....(((....)))..((.(((.(((((((......)))))))))).)).........- ( -18.10, z-score = -1.85, R) >droEre2.scaffold_4690 1214327 65 + 18748788 UACUUU----ACUUUAGCUUUUGCUUCGCCGGCCGAUAGGCAACCGCGUCUAUCGCCCGCCACCCCCGC- ......----.....(((....)))..((.(((.(((((((......)))))))))).)).........- ( -18.10, z-score = -1.85, R) >droMoj3.scaffold_6328 3991988 65 + 4453435 ---CCGCCACCCAGCAGCCGCUGCACAGCUGUUUGCUGCUUAAAUGCAUAAAUUUCCGCUCAACUACG-- ---..((.....((((((.(((....))).....)))))).....)).....................-- ( -12.40, z-score = -0.19, R) >consensus UACCUUUUAAACUUUAGCUUUUGCUUCGCCGGCCGAUAGGCAACCGCGUCUAUUGCCCGCCACCACCAA_ ................((....))...((.((.((((((((......)))))))))).)).......... ( -8.85 = -9.93 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:55 2011