| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,951,003 – 9,951,099 |
| Length | 96 |
| Max. P | 0.548361 |
| Location | 9,951,003 – 9,951,099 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 86.40 |
| Shannon entropy | 0.23982 |
| G+C content | 0.56723 |
| Mean single sequence MFE | -23.82 |
| Consensus MFE | -14.00 |
| Energy contribution | -14.78 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.548361 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9951003 96 + 23011544 GCGACAGCUGACACCAUCGGCGAACGCGCCUUUUUAACGAGCGAGCGACCAGCUCGACCCCACCUAGUAUU-ACACG-----GAGUGAUUACAUAGCGCCCA ......(((((.....)))))....((((............(((((.....)))))..........(((((-((...-----..)))).)))...))))... ( -23.70, z-score = -1.31, R) >droSim1.chr2L 9740436 96 + 22036055 GCGACAGCUGACACCAUCGGCGAACGCGCCUUUUUAACGAGCGAGCGACCAGCUCGACCCCACCUAGUAUC-ACACG-----GAGUGAUUACAUAGCGCCCA ......(((((.....)))))....((((............(((((.....)))))..........(((((-((...-----..)))).)))...))))... ( -25.90, z-score = -1.90, R) >droSec1.super_3 5397717 96 + 7220098 GCGACAGCUGACACCAUCGGCGAACGCGCCUUUUUUACGAGCGAGCGACCAGCUCGACCCCACCUAGUAUC-ACACG-----GAGUGAUUACAUAGCGCACA ......(((((.....)))))....((((............(((((.....)))))..........(((((-((...-----..)))).)))...))))... ( -26.80, z-score = -2.21, R) >droYak2.chr2L 12641611 97 + 22324452 GCGACAGCUGACACCAUCGGCGAACGCGCCUUUUUAACGAGCGA----CCAACGCGACCCCACCUAGUAUC-ACCCGACCCGGAGUGAUUACAUAGAGCCCA (((...(((((.....)))))...)))((...........(((.----....)))........((((((((-(((((...))).)))).))).))).))... ( -24.60, z-score = -2.82, R) >droEre2.scaffold_4929 10571155 97 + 26641161 GCGACAGCUGACACCAUCGGCGAACGCGCCUUUUUAACGAGCGA----CCAGCUCGACCCCACCUAGUAUC-ACCCGACCCGGAGUGACUACAUAGAGCCCA (((...(((((.....)))))...)))((........(((((..----...))))).......((((((((-(((((...))).)))).))).))).))... ( -29.90, z-score = -4.37, R) >droAna3.scaffold_12916 13790328 88 + 16180835 GCGACAGCUGACACCAUAAGCAAACGCGCCUUUU-AACGAACGA----CUAGC--GACCCCACCUAGUAUCCACCUG-----GAAUGAUUACAUAGACUA-- (((...(((.........)))...))).......-........(----((((.--(......)))))).(((....)-----))................-- ( -12.00, z-score = -0.92, R) >consensus GCGACAGCUGACACCAUCGGCGAACGCGCCUUUUUAACGAGCGA____CCAGCUCGACCCCACCUAGUAUC_ACACG_____GAGUGAUUACAUAGAGCCCA (((...(((((.....)))))...)))((........(((((.........))))).......((((((((.((.(......).)))).))).))).))... (-14.00 = -14.78 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:20 2011