| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,825,626 – 3,825,721 |
| Length | 95 |
| Max. P | 0.939547 |
| Location | 3,825,626 – 3,825,721 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 89.74 |
| Shannon entropy | 0.16097 |
| G+C content | 0.57650 |
| Mean single sequence MFE | -21.23 |
| Consensus MFE | -18.25 |
| Energy contribution | -19.25 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.939547 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3825626 95 + 22422827 GUACCUUUGCAGGCGCGUGGAGCUGUCGCAGUUUCACUCCCAACUGCCCCUCAUCCACAUCCGUGUGCUUAUCCACAUCCUCACAUCCUUACAUC ........(((.(((.(((((...(..((((((........))))))..)...)))))...))).)))........................... ( -23.30, z-score = -3.04, R) >droSim1.chrX 2836839 87 + 17042790 GUACCUUUGCAGGCGCGUGGAGCUGUCGCAGUUUCACUCCCAACUGCCCCCCAUCCACAUCCGUGUGCUUAUCCACAUCCUCACAUC-------- ........(((.(((.(((((...(..((((((........))))))..)...)))))...))).)))...................-------- ( -22.60, z-score = -2.69, R) >droSec1.super_4 3295660 87 - 6179234 GUACCUUUGCAGGCGCGUGGAGCUGUCGCAGUUUCACUCCCAACUGCCCCCCAUCCACAUCCGUGUGCUUACCCACAUCCCCACAUC-------- ........(((.(((.(((((...(..((((((........))))))..)...)))))...))).)))...................-------- ( -22.60, z-score = -2.64, R) >droYak2.chrX 17182514 87 - 21770863 GUACCUUUGCCGACGCGUGGAGCUGUCGCAGCUUCAAUCCCAACUGCCCCACAUCCUCAGCCGCGUGCUUAUCCACAUCCUCACAUC-------- ........((..(((((((((((((...)))))))).......(((...........))).)))))))...................-------- ( -16.40, z-score = -0.38, R) >consensus GUACCUUUGCAGGCGCGUGGAGCUGUCGCAGUUUCACUCCCAACUGCCCCCCAUCCACAUCCGUGUGCUUAUCCACAUCCUCACAUC________ ........(((.(((.(((((...(..((((((........))))))..)...)))))...))).)))........................... (-18.25 = -19.25 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:54 2011