| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,823,970 – 3,824,084 |
| Length | 114 |
| Max. P | 0.728511 |
| Location | 3,823,970 – 3,824,084 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 73.43 |
| Shannon entropy | 0.50560 |
| G+C content | 0.31134 |
| Mean single sequence MFE | -18.33 |
| Consensus MFE | -8.64 |
| Energy contribution | -9.62 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.728511 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3823970 114 - 22422827 AUAUUAUUAAGAACACUAAGAACCAUUGAUAUAAAUGAAC-AUACA-AGAAGAGCUUAAAAAUGCAUCCCA-UACUUGAUCGUUACUAUAGCGAUCGAUAUCAGAUCAAGCUUAUAA ................((((.....(((((.....(((..-.....-......((........))......-...((((((((((...))))))))))..))).))))).))))... ( -16.90, z-score = -1.57, R) >droSim1.chrX 2835072 114 - 17042790 AUAUUAUUAAGAACAUUAAGAACCAUUGAAAUCAAUGAAC-AUACA-AGAAGAGCUUAAAAAUGCAUCCCA-UACUUGAUCGUUACUAUAGCGAUCGAUAUCAGAUCAAGCUUAUAA .......................(((((....)))))...-.....-....(((((......((.(((..(-((.((((((((((...)))))))))))))..)))))))))).... ( -19.30, z-score = -2.34, R) >droSec1.super_4 3293921 113 + 6179234 AUAUUAUUAAGAACAUUAAGAA-CAUAGAUAUCAAUGAAC-AUACA-AGAAGAGCUUAAAAAUGCAUCCCA-UACUUGAUCGUUACUAUAGCGAUCGAUAUCAGAUCAAGCUUAUAA ......................-....((((((.......-.....-......((........))......-.....((((((((...))))))))))))))............... ( -17.50, z-score = -1.49, R) >droYak2.chrX 17180864 111 + 21770863 AUAUUAUUAAUUACAACAC----UAUUGAUAUCUAUGAACAAGCCA-AGAAGAGCUUAAAAAUGCAUCCCA-UACUUGAUCGUUACUAUAGUGAUCGAUAUCAGAUCAAGCUUAUCA ...................----..((((((((...((.((((...-....((((........)).))...-..)))).))(((((....))))).))))))))............. ( -15.30, z-score = -0.22, R) >droEre2.scaffold_4690 1207995 109 - 18748788 AUAUUAUAAAUUACAACAC----UAUUGA-AUUAAUGAAC-AUCCA-AUAAGAGCCUAAAAAUGCAUCCCA-UACUUGAUCGUUACUUUAGCGAUCGAUAUCAGAUCAAGCUUUUAA ...((((.((((.(((...----..))))-))).))))..-.....-.(((((((.......((.(((..(-((.((((((((((...)))))))))))))..))))).))))))). ( -16.70, z-score = -2.12, R) >droAna3.scaffold_13117 758253 108 - 5790199 AGAUUAUUUAGAUCCUUAAGCG-AGUUUGUUCCAACUUCCAUCGCACUUAGGAACUUUAAUCUAAGACACACCACUUGAUUGAUCCUGAAGGAUCUUGAGACGUACUAA-------- ......((.((((((((..(((-(....((....)).....))))...(((((...((((((.(((........)))))))))))))))))))))).))..........-------- ( -24.30, z-score = -2.02, R) >consensus AUAUUAUUAAGAACAUUAAGAA_CAUUGAUAUCAAUGAAC_AUACA_AGAAGAGCUUAAAAAUGCAUCCCA_UACUUGAUCGUUACUAUAGCGAUCGAUAUCAGAUCAAGCUUAUAA .........................((((((((....................((........))............(((((((.....)))))))))))))))............. ( -8.64 = -9.62 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:54 2011