| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,822,584 – 3,822,676 |
| Length | 92 |
| Max. P | 0.597860 |
| Location | 3,822,584 – 3,822,676 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.92 |
| Shannon entropy | 0.39423 |
| G+C content | 0.56396 |
| Mean single sequence MFE | -28.78 |
| Consensus MFE | -19.25 |
| Energy contribution | -19.75 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.597860 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3822584 92 - 22422827 GCCGGAGGACAUCGGUGUCCUUGCAUUUGCCAAGAGGGUACCAUCUGCCUGGUGGCCUCCCCUUAUGCACAUCCUUACCCCAUUUUCCUUGG---------------------------- ...((((((((....))))).(((((..(....((((.(((((......))))).))))..)..)))))..))).....(((.......)))---------------------------- ( -28.40, z-score = -0.77, R) >droSim1.chrX 2833729 91 - 17042790 GCCCGAGGACAUCGGUGUCCUUGCAUUUGCCAAGAGGGUACCAUCUGCCUGGUGGCCUCCCCUUAUGCACAUCCUUACCCCAUUUCCUUGG----------------------------- ..(((((((....((((....(((((..(....((((.(((((......))))).))))..)..)))))......)))).....)))))))----------------------------- ( -30.50, z-score = -2.05, R) >droSec1.super_4 3292573 92 + 6179234 GCCCGAGGACAUCGGUGUCCUUGCAUUUGCCAAGAGGGUACCAUCUGCCUGGUGGCCUCCCCUUAUGCACAUCCUUACCCCAUUUUCCUUGG---------------------------- ..(((((((....((((....(((((..(....((((.(((((......))))).))))..)..)))))......))))......)))))))---------------------------- ( -29.90, z-score = -1.90, R) >droYak2.chrX 17179578 92 + 21770863 GCCCGAGGAUAUCGGUGUCCUUGCAUUUGCUAAGAGGGUACCAUCUGCCUGGUGGCCUCCCCUUAUGCACAUCCUUUUCCUAUUUUCCUUGG---------------------------- ..(((((((....(((((....)))))(((((((.(((..(((((.....)))))...))))))).)))................)))))))---------------------------- ( -28.10, z-score = -1.82, R) >droEre2.scaffold_4690 1206685 92 - 18748788 UCCCGAGGACAUCGGUGUCCUUGCAUUUGCUAAGAGGGUACCAUCUGCCUGGUGGCCUACCCUUAUGCACAUCCUUUCCCCAUCUUCCUAGG---------------------------- ...((((((((....))))))))....(((...((((((((((((.....)))))..)))))))..))).......................---------------------------- ( -28.80, z-score = -1.74, R) >droAna3.scaffold_13117 756834 120 - 5790199 UCCCGAGGACAUCGGUGUCCUUGCAUCCUCUAAGAGCGUAACAUCUGGCUCGCUUCGCCGUCUGCCACUCCGCCUCCCGCCGCUUCUCCGGCAAGACCUCCUUCGAAAUCCCUUCCGUGG ...((((((..((((((.....(((..(.....(((((...(....)...)))))....)..))).....))))....((((......))))..))..))).))).....((......)) ( -27.00, z-score = 0.75, R) >consensus GCCCGAGGACAUCGGUGUCCUUGCAUUUGCCAAGAGGGUACCAUCUGCCUGGUGGCCUCCCCUUAUGCACAUCCUUACCCCAUUUUCCUUGG____________________________ ...((((((((....))))))))....(((..((.(((..(((((.....)))))...)))))...)))................................................... (-19.25 = -19.75 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:53 2011