| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,821,813 – 3,821,905 |
| Length | 92 |
| Max. P | 0.854254 |
| Location | 3,821,813 – 3,821,905 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 50.27 |
| Shannon entropy | 0.83571 |
| G+C content | 0.42377 |
| Mean single sequence MFE | -18.86 |
| Consensus MFE | -7.25 |
| Energy contribution | -10.25 |
| Covariance contribution | 3.00 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.854254 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3821813 92 - 22422827 AUUGUCCUGUUCCUGGUGGGCAGGACAUUGCGAAUAAAACACAAGUGUGGUGAACAAGUUGAGAAUACGGCGAGGGGAGCUGCUAAUAAAAA ..((((((((.((....))))))))))...................(..((...(..((((......))))...)...))..)......... ( -22.00, z-score = -0.40, R) >droAna3.scaffold_13117 756180 73 - 5790199 -------------------CAAGGACUCUUUGUGCAAACAGGAGACAUUAAACCGGAGACAGGCCGGACUCGGCAUGCUUUGUUAAUAAAAA -------------------......(((((.((....)))))))..(((((..(((((.((.((((....)))).))))))))))))..... ( -17.10, z-score = -1.18, R) >droEre2.scaffold_4690 1205896 89 - 18748788 GAUGUCCUGUCCUUAGUGGGCAGGACAUUGCGAAUGAAACAAGUGAAAAAUGUAGAA---AAAUGUGAGGGAAAUGGGCCUGGUAAUAAAAA ((((((((((((.....))))))))))))............................---...((..(((........)))..))....... ( -22.60, z-score = -2.92, R) >droYak2.chrX 17178780 89 + 21770863 GAUGUCCUAACCUUGGUGGGCAGGAUAUUGCGAAUAAAACAAGUGAAAAAUGUAGAA---AAUUGUAGAGGAAGUGGACCUGGUAAUCAAUA ((((((((..((.....))..))))))))..((.....((((...............---..))))..(((.......))).....)).... ( -13.73, z-score = 0.47, R) >consensus GAUGUCCUGUCCUUGGUGGGCAGGACAUUGCGAAUAAAACAAAUGAAAAAUGUAGAA___AAGUGUAAGGCAAGUGGACCUGGUAAUAAAAA ((((((((((((.....))))))))))))............................................................... ( -7.25 = -10.25 + 3.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:52 2011