| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,817,547 – 3,817,657 |
| Length | 110 |
| Max. P | 0.792582 |
| Location | 3,817,547 – 3,817,657 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 79.23 |
| Shannon entropy | 0.36323 |
| G+C content | 0.48067 |
| Mean single sequence MFE | -33.78 |
| Consensus MFE | -21.45 |
| Energy contribution | -23.09 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.792582 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3817547 110 + 22422827 AGAUGGAGUUUUCCCGCAGUGAAGAAAUGCCGUUGGAAGCCAUGUUCCCAAGGGCUUUCACUUCGCGGGGGCUCCAAGAUUCGGUAAUGGGGAAACAAAGUUACAUGGAA ...((((((..(((((((((((((....(((.((((.(((...))).)))).))))))))))..))))))))))))...(((((((((..(....)...))))).)))). ( -44.20, z-score = -3.31, R) >droEre2.scaffold_4690 1201591 110 + 18748788 AGAAGGAGUUUUCCCGCAGUGAAGAAAUGCUGAUUGAAACCAUAUUCCCAAGGGUUUUCGCUUCACGGGGGCUUCAAGAUUGGGUAAUGGGGAAACAAAGUAAAAUGGAA .......((((((((.((((........))))...........(((((((((((((..((.....))..))))).....))))).))))))))))).............. ( -28.10, z-score = -0.16, R) >droYak2.chrX 17174549 110 - 21770863 AGAAGUAGUUUUCCCGCAGUGGGGAAAUGCUGAUUGAAGCCAUCUUCCCAAGGGUUUUCGCUUCACGGGAGCUCCAAGAUUCGGUAAUGGGGAAACAAAGUUACUUGGAA ..((((((((((((((...((((((.(((((......)).))).)))))).(((((..((.....))..))).))............))))))))).....))))).... ( -33.50, z-score = -0.69, R) >droSec1.super_4 3287902 98 - 6179234 AGAUGGAGUUUUCCCGCAGUGAAGAAAUACCGAAGAAAU------------GGGCUCUCACAUCGCGGGGGCUCCAGGAUUCGGUAAUGGGGAAACGAAGUUACAUGGAA .(((...((((((((((......)...(((((((....(------------((((((((.......)))))).)))...))))))).)))))))))...)))........ ( -32.90, z-score = -2.20, R) >droSim1.chrX 2828882 87 + 17042790 AGAUGGAGUUUUCCCGCAGUGAAGAAAU-----------------------GGGUUCUCACAUCGCGGGGGCUCCAAGAUUCGGUAAUGGGGAAACGAAGUUACAUGGAA ...((((((..((((((.((((.(((..-----------------------...)))))))...))))))))))))...(((((((((..(....)...))))).)))). ( -30.20, z-score = -2.64, R) >consensus AGAUGGAGUUUUCCCGCAGUGAAGAAAUGCCGAUGGAAGCCAU_UUCCCAAGGGUUUUCACUUCGCGGGGGCUCCAAGAUUCGGUAAUGGGGAAACAAAGUUACAUGGAA ....(((((..((((((((((((((.............................))))))))..)))))))))))....(((((((((..(....)...))))).)))). (-21.45 = -23.09 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:51 2011