| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,815,606 – 3,815,701 |
| Length | 95 |
| Max. P | 0.992302 |
| Location | 3,815,606 – 3,815,701 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 66.19 |
| Shannon entropy | 0.55410 |
| G+C content | 0.35787 |
| Mean single sequence MFE | -18.95 |
| Consensus MFE | -11.73 |
| Energy contribution | -12.36 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.53 |
| SVM RNA-class probability | 0.992302 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3815606 95 + 22422827 AAAUGGAGUCCCAAGUGAAGAGAGCUUAGCCGCAAAAAUGAAAAAAAAAAACAAAAAAAAAAGAUAAUGUGAAUGCUGCCUUUUCAUUUGGUUUG ..........((((((((((((.((..(((((((.................................))))...))))))))))))))))).... ( -19.01, z-score = -2.29, R) >droWil1.scaffold_180588 17968 91 - 1294757 CGCUACAGUCCAAA--GAUUAGAGUUACUGUGUAUGUUCUAAACAAAAUUCGUGGGAGGAUGAAUAA-AUAAAAG-UGGAGUUUCAACUUGUACG ((.(((((((((..--(.(((((..(((...)))...))))).)...((((((......))))))..-.......-))))((....))))))))) ( -10.40, z-score = 1.85, R) >droSec1.super_4 3286142 83 - 6179234 AAAUGGAGUCCCAAAUGAAGAGAGCUUAGCCGCAAAAAUAAAAAA------------GAAAAGAUAAUGUGAAGGCUGCCUUUUCAUUUGGUUCG .......(..((((((((((((.((..((((..............------------................))))))))))))))))))..). ( -23.21, z-score = -3.50, R) >droSim1.chrX 2826665 84 + 17042790 AAAUGGAGUCCCAAGUGAAGAGAGCUUAGCCGCAAAAAUAAAAAAA-----------GAAAAUAUAAUGUGAAGGCUGCCUUUUCAUUUGGUUCG .......(..((((((((((((.((..((((...............-----------................))))))))))))))))))..). ( -23.18, z-score = -3.60, R) >consensus AAAUGGAGUCCCAAGUGAAGAGAGCUUAGCCGCAAAAAUAAAAAAA___________GAAAAGAUAAUGUGAAGGCUGCCUUUUCAUUUGGUUCG .......(..((((((((((((.((.....((((.................................))))......))))))))))))))..). (-11.73 = -12.36 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:50 2011