| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,814,831 – 3,814,975 |
| Length | 144 |
| Max. P | 0.614389 |
| Location | 3,814,831 – 3,814,975 |
|---|---|
| Length | 144 |
| Sequences | 4 |
| Columns | 152 |
| Reading direction | forward |
| Mean pairwise identity | 80.56 |
| Shannon entropy | 0.31181 |
| G+C content | 0.40184 |
| Mean single sequence MFE | -34.22 |
| Consensus MFE | -20.96 |
| Energy contribution | -24.27 |
| Covariance contribution | 3.31 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.614389 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3814831 144 + 22422827 CUUCAGAGCAAACUGAUUAUUAGCAGGAACUUUCCGUCAAAACCCUUGACGUGAAAUUUGCCAAUUUACAAUACCACAUCGCAAGGCAGAGAAGUAUUAU--AUUGUGAA------GUGCAAGUCUUAUUGCCGAGACAAGUGGCUUGUACU .....(.((((((((........)))....((((((((((.....)))))).))))))))))..(((((((((......(....)((......))....)--))))))))------(((((((((...(((......)))..))))))))). ( -35.90, z-score = -1.64, R) >droSec1.super_4 3285403 150 - 6179234 UUUCAGAGCAAACUGAUUAUAAGCAGGAACUUUCCGUCAAAACCCUUGACGAGAAAUUUGCCAAUUUACAAUACCACAUCGCAAGGCAGAGAAGUAUUAU--AUUGUGAACCACAAGUGCAAGUCUUAUUGCCGAGAUAAGUGGCUUGUACU ..((((......)))).(((((((.((((.((((((((((.....)))))).)))).)).))............((((((....((((((((.((((...--.(((((...)))))))))...))))..))))..)))..)))))))))).. ( -37.30, z-score = -2.47, R) >droYak2.chrX 17171947 149 - 21770863 ---CAGAACAACCUGAAUAUGAGCAGGAAGUCUCCGUCAAAACCCUUGACGAGACAUUUACCAAUUUACAAUACCACAUUGCAAGACAGGGAAGUAUUGUUGCCAACCAACCACAAGUGCAAGUCUUCAUGCCGAGUUAAGUGGCUUGUACU ---(((......)))....((.(((....(((((.(((((.....))))))))))............(((((((....(((.....)))....))))))))))))..........((((((((((.....((...)).....)))))))))) ( -34.70, z-score = -0.94, R) >droEre2.scaffold_4690 1198814 128 + 18748788 UUUCAGAACAAACUGAUUAUGAGCAGGAACUUUCCGUCAAAACCCUUGACGAAAAAUUUGCCAAUUUACAAUACCACAUUGUAAGGCAGAGAAGUAC-----AUUACAUA-------------------UGCCGAGAUAAGUGGCUUGUACU ..((((......)))).((..(((..(.(((((.((((((.....)))))).....((((((...(((((((.....)))))))))))))))))).)-----..(((.((-------------------(......))).))))))..)).. ( -29.00, z-score = -2.56, R) >consensus UUUCAGAACAAACUGAUUAUGAGCAGGAACUUUCCGUCAAAACCCUUGACGAGAAAUUUGCCAAUUUACAAUACCACAUCGCAAGGCAGAGAAGUAUUAU__AUUACGAA______GUGCAAGUCUUAUUGCCGAGAUAAGUGGCUUGUACU ..((((......)))).(((((((.((((.((((((((((.....)))))).)))).)).))............(((.......((((((((.(((((.................)))))...))))..)))).......)))))))))).. (-20.96 = -24.27 + 3.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:49 2011