| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,811,276 – 3,811,366 |
| Length | 90 |
| Max. P | 0.869030 |
| Location | 3,811,276 – 3,811,366 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 85.93 |
| Shannon entropy | 0.19847 |
| G+C content | 0.30867 |
| Mean single sequence MFE | -19.17 |
| Consensus MFE | -12.26 |
| Energy contribution | -12.60 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.869030 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3811276 90 - 22422827 AUGCUACCAACUAAUAUGGCUGAUUGAAUUCAGUUAACAUGCAUAUUUGUAACAUGAACGCGAAAAUUGCCUUUACGUUAAAAAUAGCAA ................(((((((......)))))))...(((.(((((.((((.((((.((((...)))).)))).)))).)))))))). ( -19.10, z-score = -2.09, R) >droSim1.chrX 2806801 90 - 17042790 AAGCUACCAAUUAAUAUGGCUGAUUGAAUUCAGUUAGCAUACGUAUUUGAAACAGAAACGCAAAAAUUGCCUCUACUUUAAAAAUAGCAA ..((((............((((((((....)))))))).......((((((..(((...(((.....))).)))..))))))..)))).. ( -18.80, z-score = -2.49, R) >droSec1.super_4 3281856 82 + 6179234 AUGCUACCAAUUAAUAUGGCUGAUUGAAUUCAGUUAGCAUACGUAUUUGUAA--------CAAAAAUUACCUCUACGUUAAAAAUAGCAA .(((((............((((((((....))))))))..(((((...((((--------......))))...)))))......))))). ( -19.60, z-score = -3.52, R) >consensus AUGCUACCAAUUAAUAUGGCUGAUUGAAUUCAGUUAGCAUACGUAUUUGUAACA__AACGCAAAAAUUGCCUCUACGUUAAAAAUAGCAA ..((((............((((((((....)))))))).((((....)))).................................)))).. (-12.26 = -12.60 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:48 2011