| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,809,298 – 3,809,394 |
| Length | 96 |
| Max. P | 0.827397 |
| Location | 3,809,298 – 3,809,394 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 90.51 |
| Shannon entropy | 0.16438 |
| G+C content | 0.40166 |
| Mean single sequence MFE | -19.70 |
| Consensus MFE | -19.10 |
| Energy contribution | -17.98 |
| Covariance contribution | -1.12 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.827397 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3809298 96 + 22422827 --UAUGUAGCCAGUGACAGGCCAGCAGUUCAUUGACACAUUCGACUGCAGCUGCUUAAAUAUUCAUUUCCCUAAAUAAUUUCACGGUUUGCCAAUCAA --...........((.(((((((((((((((((((.....)))).)).))))))).........((((....))))........)))))).))..... ( -16.80, z-score = 0.02, R) >droEre2.scaffold_4690 1193593 98 + 18748788 UGCAAACAGCCAGUGAAAAUCCAGCAGUUCAUUGACACAUUCAACUGCAGCUGCUUAAAUAUUCAUUUCCCCAAAUAAUUUCACGGUUUGUCAAUCAG .((((((.....((((((....(((((((((((((.....)))).)).))))))).........((((....))))..)))))).))))))....... ( -19.70, z-score = -2.42, R) >droYak2.chrX 17164882 98 - 21770863 UGAAAACGGCCAGUGAAAAGCCAGCGGUUCACUGACACAUUCAACUGCAGCUGCUUAAAUAUUCAUAUCCCUAAAUAAUUUCACGGUUUGUCAAUCAA (((....((((.((((((....(((((((((.(((.....)))..)).)))))))..........(((......))).))))))))))..)))..... ( -16.80, z-score = -0.09, R) >droSec1.super_4 3279714 98 - 6179234 UGAAUGUAGCCAGUGAAAAGCCAGCAGUUCAUUGACACGUUCGACUGCAGCUGCUUAAAUAUUCAUUUCCCUAAAUAAUUUCACGGCUUGCCAAUCAA (((.((.((((.((((((....(((((((((((((.....)))).)).))))))).........((((....))))..))))))))))...)).))). ( -22.60, z-score = -1.68, R) >droSim1.chrX 2804732 98 + 17042790 UGAAUGUAGCCAGUGAAAAGCCAGCAGUUCAUUGACACGUUCGACUGCAGCUGCUUAAAUAUUCAUUUCCCUAAAUAAUUUCACGGCUUGCCAAUCAA (((.((.((((.((((((....(((((((((((((.....)))).)).))))))).........((((....))))..))))))))))...)).))). ( -22.60, z-score = -1.68, R) >consensus UGAAUGUAGCCAGUGAAAAGCCAGCAGUUCAUUGACACAUUCGACUGCAGCUGCUUAAAUAUUCAUUUCCCUAAAUAAUUUCACGGUUUGCCAAUCAA .....((((((.((((((....(((((((((((((.....)))).)).)))))))....((((..........)))).))))))))).)))....... (-19.10 = -17.98 + -1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:48 2011