| Sequence ID | dm3.chr2L |
|---|---|
| Location | 886,362 – 886,454 |
| Length | 92 |
| Max. P | 0.626283 |
| Location | 886,362 – 886,454 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 72.36 |
| Shannon entropy | 0.46724 |
| G+C content | 0.51703 |
| Mean single sequence MFE | -23.17 |
| Consensus MFE | -11.23 |
| Energy contribution | -11.62 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.626283 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 886362 92 + 23011544 ---------CGAACCAAGAGCCAACGCAGCUUUAAGUGCUCCCCCUCC-GUGGAUGGCAUUUUUAUGACAUCCAAUCCGAGGUCUGCGACUGAUUGCUCCAC ---------........((((((.((((((.......))....((((.-.((((((.(((....))).))))))....))))..))))..))...))))... ( -24.50, z-score = -1.34, R) >droPer1.super_8 3437217 100 + 3966273 CGCCCAGUCCCAGUUCCACUCCAUUCCCUGUCCCAGUCUGUGCCAUUCGCUAGAUGACAUUUUUAUGACAUCCAAUCCGGAGUCUGCGACUGAUUGCUCU-- .((.(((((.(((....(((((......((((...(((((.((.....)))))))))))......((.....))....)))))))).)))))...))...-- ( -23.70, z-score = -1.97, R) >dp4.chr4_group2 783345 100 - 1235136 CGCCCAGUCCCAGUUCCACUCCAUUCCCUGUCCCAGUCUGUGCCAUUCGCUAGAUGACAUUUUUAUGACAUCCAAUCCGGAGUCUGCGACUGAUUGCUCU-- .((.(((((.(((....(((((......((((...(((((.((.....)))))))))))......((.....))....)))))))).)))))...))...-- ( -23.70, z-score = -1.97, R) >droEre2.scaffold_4929 944583 85 + 26641161 -----------------GCGCCAACGCAGCUUUAAGUGCUCCCCUUUCAGUGGAUGGCAUUUUUAUGACAUCCAAUCCGAGGUCUGCGACUGAUUGCUCCAC -----------------(((....)))(((....(((((...((((....((((((.(((....))).))))))....))))...)).)))....))).... ( -25.00, z-score = -1.81, R) >droYak2.chr2L 870956 84 + 22324452 -----------------ACGCCAACGCAGCUUUAAGUGCUCCCUUACC-GUGGAUGGCAUUUUUAUGACAUCCAAUCCAAAGUCUGCGACUGAUUGCUCCAC -----------------.......((((((((((((......)))...-.((((((.(((....))).))))))....)))).))))).............. ( -19.50, z-score = -1.34, R) >droSec1.super_14 856991 84 + 2068291 -----------------ACGCCAACGCAGCUUUAAGUGCUCCCCUUCC-GUGGAUGGCAUUUUUAUGACAUCCAAUCCGAGGUCUGCGACUGAUUGCUCCAC -----------------........(.(((....(((((...((((..-.((((((.(((....))).))))))....))))...)).)))....))).).. ( -22.60, z-score = -1.48, R) >consensus _________________ACGCCAACGCAGCUUUAAGUGCUCCCCUUCC_GUGGAUGGCAUUUUUAUGACAUCCAAUCCGAAGUCUGCGACUGAUUGCUCCAC ........................(((((((((..(......).......((((((.(((....))).))))))....)))).))))).............. (-11.23 = -11.62 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:15 2011