| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,799,371 – 3,799,476 |
| Length | 105 |
| Max. P | 0.516478 |
| Location | 3,799,371 – 3,799,476 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 77.35 |
| Shannon entropy | 0.41788 |
| G+C content | 0.58555 |
| Mean single sequence MFE | -41.85 |
| Consensus MFE | -17.67 |
| Energy contribution | -18.92 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.516478 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3799371 105 + 22422827 CAAAGACAAUGGCCAACAACUGUUGG------CCCACAGGGUGGCGACGAG-AGGUCACAGUUGAAGGCUCUAGGCGGUCGGGGUCACCUAAUUAGGGUGGCCAUUAUCCUC ..........(((((((....)))))------))...(((((((((((.((-((.(((....)))...)))).....)))).((((((((.....)))))))).))))))). ( -39.50, z-score = -1.92, R) >droSim1.chrX 2813196 105 + 17042790 CAAAGACAAUGGCCAACAACUGUUGG------CCCACAGGGAGGCGACGAG-AGGUCACAGUUGAAGGCUCUAGGCGGUCGGGGUCACCUAAUUAGGGUGGCCCUUCUGCUC ..........((((..(((((((..(------((........)))(((...-..))))))))))..))))...(((((..((((((((((.....)))))))))).))))). ( -45.10, z-score = -2.87, R) >droSec1.super_4 3269970 105 - 6179234 CAAAGACAAUGGCCAACAACUGUUGG------CCCACAGGGAGGCGACGAG-AGGUCACAGUUGAAGGCUCCAGGCGGUCGGGGUCACCUAAUUAGGGUGGCCCUUCUGCUC ..........(((((((....)))))------)).....((((.(..(((.-.(....)..)))..).)))).(((((..((((((((((.....)))))))))).))))). ( -45.90, z-score = -2.83, R) >droYak2.chrX 17154999 100 - 21770863 CAAAGACAAUGGCGAGUUCUUGC---------CCCACAAGGAGGCGACGAG-AGGUCACAUUUGAGGGCUA--GGCGGUCGGGGUCACCUAAUUAGGGUGACCCUUCUCCUC ....(((....((.(((((((((---------(((....)).)))(((...-..)))......))))))).--.)).)))((((((((((.....))))))))))....... ( -39.40, z-score = -1.98, R) >droEre2.scaffold_4690 1182925 111 + 18748788 CAAAGACAAUGGCGAGUUGUUGGUGGCGACGACCCACAAGGUGGCGACGAG-AGAUCACAGUCGAGGGCUCUCGGCGGUCGGGGUCACCUAAUUAGGGUGGCCCUACUGCUC ((..((((((.....))))))..)).((.(.(((.....))).))).((((-((.((......))...))))))(((((.((((((((((.....))))))))))))))).. ( -46.50, z-score = -2.24, R) >droAna3.scaffold_13117 740614 94 + 5790199 CAAGGACAAUGGCACAAUGCCGG-----------CACAUCCUUGGGCCGAGGAGGCCAGAGUUCA-----CACAGUGGCCGGG-UCAGGUAAUUAGG-UGGCCUUCCUCCCC ((((((...((((.....)))).-----------....))))))((..((((((((((..((...-----.))..)))))(((-(((..........-))))))))))))). ( -34.70, z-score = -0.53, R) >consensus CAAAGACAAUGGCCAACAACUGUUGG______CCCACAGGGAGGCGACGAG_AGGUCACAGUUGAAGGCUCUAGGCGGUCGGGGUCACCUAAUUAGGGUGGCCCUUCUCCUC ....(((....(((.....(((..............)))...)))(((......)))....................)))((((((((((.....))))))))))....... (-17.67 = -18.92 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:45 2011