Locus 12998

Sequence ID dm3.chrX
Location 3,794,009 – 3,794,108
Length 99
Max. P 0.935808
window17868

overview

Window 8

Location 3,794,009 – 3,794,108
Length 99
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 73.75
Shannon entropy 0.34226
G+C content 0.49435
Mean single sequence MFE -36.13
Consensus MFE -27.01
Energy contribution -26.47
Covariance contribution -0.54
Combinations/Pair 1.31
Mean z-score -1.88
Structure conservation index 0.75
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.40
SVM RNA-class probability 0.935808
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 3794009 99 - 22422827
AACCCAAUAUUUCAUUAGCAGCGGAUAAUUUCUGCUGCAAGUGACGCAACAUGUGUGUGUCGCCGUGCAGCAACAGUUGCCAGCGGAUG---AUUUCUGGUC------------------
...(((.....(((((.((((((((.....))))))))..((((((((.(....)))))))))((((((((....)))))..)))))))---)....)))..------------------ ( -37.30, z-score =  -3.08, R)
>droYak2.chrX 17149390 118 + 21770863
AACCCAAUAUUUCAUUAGCGCCGGAUAAUUGCAGCUGCAAGUGGCGCAACAC--GUGUGUCUCCAUGUAGCAACAGUUGCCAGCGAGCGGAUAACCUUGAUGUUUGAUUUUUGGCCUCCA
...((((.(((.(((((((((.((.((((((..((((((.(.((((((....--.)))))).)..))))))..)))))))).)))...((....))))))))...)))..))))...... ( -33.40, z-score =  -0.41, R)
>droSec1.super_4 3264507 99 + 6179234
AACCCAAUAUUUCAUUAGCAGCGGAUAAUUCAUGCUGCAAGCGGCGCAACAUGUGUGUGUCGCCGUGCAGCAACAGCUGCCAGCGGAUG---AUUUCUGGUC------------------
...(((.....(((((.(((((.((....)).(((((((.((((((((.(....)))))))))..)))))))...))))).....))))---)....)))..------------------ ( -37.70, z-score =  -2.17, R)
>consensus
AACCCAAUAUUUCAUUAGCAGCGGAUAAUUCCUGCUGCAAGUGGCGCAACAUGUGUGUGUCGCCGUGCAGCAACAGUUGCCAGCGGAUG___AUUUCUGGUC__________________
.................((((((((....))).((((((.((((((((.......))))))))..))))))....)))))...((((........))))..................... (-27.01 = -26.47 +  -0.54)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:44 2011