| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,790,470 – 3,790,522 |
| Length | 52 |
| Max. P | 0.607088 |
| Location | 3,790,470 – 3,790,522 |
|---|---|
| Length | 52 |
| Sequences | 8 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 76.51 |
| Shannon entropy | 0.49006 |
| G+C content | 0.62740 |
| Mean single sequence MFE | -22.44 |
| Consensus MFE | -9.06 |
| Energy contribution | -8.80 |
| Covariance contribution | -0.26 |
| Combinations/Pair | 1.76 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.607088 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3790470 52 - 22422827 UGCACCUGCAGACGCGUCGGAUGGUCCGCCAAAUGAGCGUUUGCCAGGGCGA .((.(((((((((((.(((..(((....)))..)))))))))).)))))).. ( -26.30, z-score = -3.21, R) >droAna3.scaffold_13117 729811 52 - 5790199 UGCAUUUGCCGGUGCGGCGGAUGGUGCGGCAGAUGAGCGUCUGCCAGGGCGA ..(((((((((...)))))))))((.((((((((....))))))).).)).. ( -25.40, z-score = -2.23, R) >droEre2.scaffold_4690 1173906 52 - 18748788 UGCACCUGCAGACGCGCCGGAUGGUCCGCCAAAUGAGCGUUUGCCAGGGCGA .((.(((((((((((..((..(((....)))..)).))))))).)))))).. ( -25.00, z-score = -2.57, R) >droYak2.chrX 17146013 52 + 21770863 UGCACCUGCAGACCCGUCGGAUGGUCCGACAAAUGAGCGUUUGUCAGGAUGA ..((((((((((((((((((.....)))))....).).))))).)))).)). ( -17.30, z-score = -1.48, R) >droSec1.super_4 3261781 52 + 6179234 UGCACCUGCAGACGCGUCGGAUGGUCCGCCAAAUGAGCGUUUGCCAGGGCGA .((.(((((((((((.(((..(((....)))..)))))))))).)))))).. ( -26.30, z-score = -3.21, R) >droSim1.chrX 2797058 52 - 17042790 UGCACCUGCAGACGCGUCGGAUGGUCCGCCAAAUGAGCGUUUGCCAGGGCGA .((.(((((((((((.(((..(((....)))..)))))))))).)))))).. ( -26.30, z-score = -3.21, R) >droGri2.scaffold_15081 1451989 52 + 4274704 UGCAUCUGCCGGCUCGUCGCAUUGUGCGCCAAAUGAGCGUCUGUCACGACGA .((....))..(((((((((.....)))....))))))(((......))).. ( -13.30, z-score = 1.04, R) >anoGam1.chr2R 1254450 52 - 62725911 UUCGCAUGCGGCUGGUCCGCAUGCUGCUGCCAGUAAGGUGCUGCUGCUGACC ...((((((((.....)))))))).((.((.(((.....))))).))..... ( -19.60, z-score = -0.36, R) >consensus UGCACCUGCAGACGCGUCGGAUGGUCCGCCAAAUGAGCGUUUGCCAGGGCGA .((.(((((((((.((((((.....)))....)))...))))).)))))).. ( -9.06 = -8.80 + -0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:43 2011