| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,786,133 – 3,786,276 |
| Length | 143 |
| Max. P | 0.920120 |
| Location | 3,786,133 – 3,786,224 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 97.58 |
| Shannon entropy | 0.04240 |
| G+C content | 0.32825 |
| Mean single sequence MFE | -13.62 |
| Consensus MFE | -12.98 |
| Energy contribution | -13.18 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.860622 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3786133 91 + 22422827 UGGCUUUCUAUAACUAAAUCUCCGUUCGCGUAUCACACUUAAAUGAUAUAUAAGAACAAGUUAACCAUUAGUCAAAUGGAUUCCCAUAAAA (((((.....(((((........((((..((((((........))))))....)))).)))))......))))).((((....)))).... ( -13.70, z-score = -1.62, R) >droEre2.scaffold_4690 1169750 90 + 18748788 UGGCUUUCUAUAACUAAACCUCCGUUCGCGUAUCACACUCAAAUGAUAUCUAAGAACAAGUUA-CCAUUAGUCAAAUGGAUUCCCAUAAAA (((((.....(((((........((((..((((((........))))))....)))).)))))-.....))))).((((....)))).... ( -14.30, z-score = -1.91, R) >droYak2.chrX 17141934 91 - 21770863 UGGCUUUCUAUAACUAAACCUCCGUUCGCGUAUCACACUUAAAUGAUAUAUAAGAACAAGUUAACCAUUAGUCAAAUGGAUUCCCAUAAAA (((((.....(((((........((((..((((((........))))))....)))).)))))......))))).((((....)))).... ( -13.70, z-score = -1.62, R) >droSec1.super_4 3257521 91 - 6179234 UGGCUUUCUAUAACUAAAUCUCCGUUCGCGUAUCACACUUAAAUGAUAUAUAACAACAAGUUAACCAUUAGUCAAAUGGAUUCCCAUAAAA (((...(((((.(((((............((((((........)))))).((((.....))))....)))))...)))))...)))..... ( -12.70, z-score = -1.68, R) >droSim1.chrX 2792811 91 + 17042790 UGGCUUUCUAUAACUAAAUCUCCGUUCGCGUAUCACACUUAAAUGAUAUAUAAGAACAAGUUAACCAUUAGUCAAAUGGAUUCCCAUAAAA (((((.....(((((........((((..((((((........))))))....)))).)))))......))))).((((....)))).... ( -13.70, z-score = -1.62, R) >consensus UGGCUUUCUAUAACUAAAUCUCCGUUCGCGUAUCACACUUAAAUGAUAUAUAAGAACAAGUUAACCAUUAGUCAAAUGGAUUCCCAUAAAA (((((.....(((((........((((..((((((........))))))....)))).)))))......))))).((((....)))).... (-12.98 = -13.18 + 0.20)
| Location | 3,786,186 – 3,786,276 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 98.67 |
| Shannon entropy | 0.02406 |
| G+C content | 0.33630 |
| Mean single sequence MFE | -16.70 |
| Consensus MFE | -16.20 |
| Energy contribution | -16.40 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.920120 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3786186 90 + 22422827 GAACAAGUUAACCAUUAGUCAAAUGGAUUCCCAUAAAAAUGCCGCUGAACUUGUCCGAAAUUCGUAUAAAGUUUGGUUUAACUUAACUUA ....((((((((((((.....))))).................((..(((((...((.....))....)))))..)))))))))...... ( -16.90, z-score = -1.89, R) >droEre2.scaffold_4690 1169803 89 + 18748788 GAACAAGUUA-CCAUUAGUCAAAUGGAUUCCCAUAAAAAUGCCGCUGAACUUGUCCGAAAUUCGUAUAAAGUUUGGUUUAACUUAACUUA ....((((((-(((((.....))))).................((..(((((...((.....))....)))))..)).))))))...... ( -16.00, z-score = -1.48, R) >droYak2.chrX 17141987 90 - 21770863 GAACAAGUUAACCAUUAGUCAAAUGGAUUCCCAUAAAAAUGCCGCUGAACUUGUCCGAAAUUCGUAUAAAGUUUGGUUCAACUUAACUUA ....((((((((((((.....))))).................((..(((((...((.....))....)))))..)).....))))))). ( -16.80, z-score = -1.83, R) >droSec1.super_4 3257574 90 - 6179234 CAACAAGUUAACCAUUAGUCAAAUGGAUUCCCAUAAAAAUGCCGCUGAACUUGUCCGAAAUUCGUAUAAAGUUUGGUUUAACUUAACUUA ....((((((((((((.....))))).................((..(((((...((.....))....)))))..)))))))))...... ( -16.90, z-score = -1.95, R) >droSim1.chrX 2792864 90 + 17042790 GAACAAGUUAACCAUUAGUCAAAUGGAUUCCCAUAAAAAUGCCGCUGAACUUGUCCGAAAUUCGUAUAAAGUUUGGUUUAACUUAACUUA ....((((((((((((.....))))).................((..(((((...((.....))....)))))..)))))))))...... ( -16.90, z-score = -1.89, R) >consensus GAACAAGUUAACCAUUAGUCAAAUGGAUUCCCAUAAAAAUGCCGCUGAACUUGUCCGAAAUUCGUAUAAAGUUUGGUUUAACUUAACUUA ....((((((((((((.....))))).................((..(((((...((.....))....)))))..)).....))))))). (-16.20 = -16.40 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:43 2011