| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,784,937 – 3,785,040 |
| Length | 103 |
| Max. P | 0.745270 |
| Location | 3,784,937 – 3,785,040 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 94.81 |
| Shannon entropy | 0.07132 |
| G+C content | 0.37134 |
| Mean single sequence MFE | -25.63 |
| Consensus MFE | -23.27 |
| Energy contribution | -22.83 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.745270 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3784937 103 - 22422827 AAAAAGGAGUACCUUUUACUUGUAAUUAAGUCCCAGAUUAGUUACACGGAAUGCGAGUCGAAUUUGUGGUAACCGUAGCUACGUUUUAGUGACUCUAAACUAU .((((((....)))))).(.(((((((((........))))))))).)......((((((....((((((.......))))))......))))))........ ( -23.70, z-score = -1.19, R) >droSec1.super_4 3256329 102 + 6179234 AAAAAGGAGUACCUUUUACUUGUAAUUAAGUCCCAGAUUAGUUACA-AGAAGGCGAGUCGACUCUGUGGUAACAGUAGCUACGUUUUAGUGGCUCUAAAAUAU .((((((....)))))).(((((((((((........)))))))))-)).....(((((.(((.((((((.......))))))....))))))))........ ( -26.60, z-score = -1.86, R) >droSim1.chrX 2791617 102 - 17042790 AAAAAGGAGUACCUUUUACUUGUAAUUAAGUCCCAGAUUAGUUACA-AGAAGGCGAGUCGACUCUGUGGUAACAGUAGCUACGUUUUAGUGGCUCUAAAAUAU .((((((....)))))).(((((((((((........)))))))))-)).....(((((.(((.((((((.......))))))....))))))))........ ( -26.60, z-score = -1.86, R) >consensus AAAAAGGAGUACCUUUUACUUGUAAUUAAGUCCCAGAUUAGUUACA_AGAAGGCGAGUCGACUCUGUGGUAACAGUAGCUACGUUUUAGUGGCUCUAAAAUAU .((((((....)))))).(((((((((((........))))))))).)).....((((((....((((((.......))))))......))))))........ (-23.27 = -22.83 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:41 2011