| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,778,719 – 3,778,809 |
| Length | 90 |
| Max. P | 0.657319 |
| Location | 3,778,719 – 3,778,809 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 97.78 |
| Shannon entropy | 0.03061 |
| G+C content | 0.51111 |
| Mean single sequence MFE | -20.86 |
| Consensus MFE | -20.32 |
| Energy contribution | -20.66 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.657319 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3778719 90 + 22422827 CCAUCUACGUAGUACGUACAUACGUACAAAUGUGGUCGGCCAUCCAUCCGCUUCUGCCUCUGUUUGCUGUGCGUUCUUCUUGCCUUGUCA ....((((((.((((((....))))))..))))))..(((........(((....((........))...)))........)))...... ( -19.09, z-score = -0.97, R) >droSim1.chrX 2784583 90 + 17042790 CCAUCUACGUAGUACGUACAUACGUACAUAUGUGGCCGGCCAUCCAUCCGCUUCUGCCUCUGUUUGCUGUGCGUUCUUCUUGCCUUGUCA ....(((((((((((((....)))))).)))))))..(((........(((....((........))...)))........)))...... ( -21.69, z-score = -1.59, R) >droSec1.super_4 3250161 90 - 6179234 CCAUCUACGUAGUACGUACAGACGUACAUAUGUGGCCGGCCAUCCAUCCGCUUCUGCCUCUGUUUGCUGUGCGUUCUUCUUGCCUUGUCA ....(((((((((((((....)))))).)))))))..(((........(((....((........))...)))........)))...... ( -21.79, z-score = -1.05, R) >consensus CCAUCUACGUAGUACGUACAUACGUACAUAUGUGGCCGGCCAUCCAUCCGCUUCUGCCUCUGUUUGCUGUGCGUUCUUCUUGCCUUGUCA ....(((((((((((((....)))))).)))))))..(((........(((....((........))...)))........)))...... (-20.32 = -20.66 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:36 2011