| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,769,177 – 3,769,277 |
| Length | 100 |
| Max. P | 0.989055 |
| Location | 3,769,177 – 3,769,277 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 93.26 |
| Shannon entropy | 0.11509 |
| G+C content | 0.46494 |
| Mean single sequence MFE | -32.52 |
| Consensus MFE | -27.16 |
| Energy contribution | -27.36 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.12 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.35 |
| SVM RNA-class probability | 0.989055 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3769177 100 + 22422827 CACGGUUUAUGGAGCCAUGUGAUGGCUGCUAUACAUUACUGCCUCAAAUAGCGGUCAUAAACGCUGAUAAAGCAUCGAUGGAUUAGC------UGCGAACCGAUUC ..((((((....((((((...))))))((((..((((..(((......(((((........))))).....)))..))))...))))------...)))))).... ( -30.20, z-score = -2.07, R) >droSim1.chrX 2775143 95 + 17042790 CACGGUUUAUGGGGCCAUGUGAUGG-----CUACAUUACUGCCUCAAAUAGCGGUCAUAAACGCUGAUAAAGCAUCGAUGGAUUAGC------UGCGAACCGAUUC ..((((((.((((((...((((((.-----...)))))).))))))..((((..((((....(((.....)))....))))....))------)).)))))).... ( -32.50, z-score = -3.09, R) >droSec1.super_4 3240912 95 - 6179234 CACGGUUUAUGGGGCCAUGUGAUGG-----CUACAUUACUGCCUCAAAUAGCGGUCAUAAACGCUGAUAAAGCAUCGAUGGAUUAGC------UGCGAACCGAUUC ..((((((.((((((...((((((.-----...)))))).))))))..((((..((((....(((.....)))....))))....))------)).)))))).... ( -32.50, z-score = -3.09, R) >droYak2.chrX 17124936 101 - 21770863 CACGGUUUAUGGGGCCAUGUGAUGG-----GUACAUUACUGCCUCAAAUAGCGGUCAUAAACGCUGAUAAAGCAUCGAUGGAUUAGCCGACAAUGCGAACCGAUUC ..((((((.((((((...((((((.-----...)))))).))))))..(((((........))))).....((((.(.(((.....))).).)))))))))).... ( -35.70, z-score = -3.44, R) >droEre2.scaffold_4690 1153213 95 + 18748788 UACGGUUUAUGGGGCCAUGUGAUGG-----CUACAUUACUGCCUCAAAUAGCGAUCAUAAACGCUGAUAAAGCAUCGAUGGAUUAGC------UACGAACCGAUUC ..((((((.((((((...((((((.-----...)))))).))))))..((((((((......(((.....))).......)))).))------)).)))))).... ( -31.72, z-score = -3.88, R) >consensus CACGGUUUAUGGGGCCAUGUGAUGG_____CUACAUUACUGCCUCAAAUAGCGGUCAUAAACGCUGAUAAAGCAUCGAUGGAUUAGC______UGCGAACCGAUUC ..((((((.((((((...((((((.........)))))).))))))....((..((((....(((.....)))....))))....)).........)))))).... (-27.16 = -27.36 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:33 2011