| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,742,999 – 3,743,110 |
| Length | 111 |
| Max. P | 0.623984 |
| Location | 3,742,999 – 3,743,110 |
|---|---|
| Length | 111 |
| Sequences | 8 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 62.76 |
| Shannon entropy | 0.72021 |
| G+C content | 0.40028 |
| Mean single sequence MFE | -13.18 |
| Consensus MFE | -5.71 |
| Energy contribution | -6.34 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.76 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.623984 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3742999 111 + 22422827 AACUCAAACUUCUUUCCCCCAACUUUUCGUCCCUUUU-----CACGAUCUCGCUCAAAACUCAAACAGUUGACAAGUGUUAAUUGUGCCGAUUCCACUCCCAAUUUCGAUUCAAGU .......((((...((..........((((.......-----.)))).............((..(((((((((....)))))))))...))................))...)))) ( -11.60, z-score = -0.38, R) >droSim1.chrX 2748697 110 + 17042790 AACUCAAACUUCUUCCCCCGAAUAUUUCGUCCCUUU------CACGAUCUCGCUCAAAACUCAAACAGUUGACAAGUGUUAAUUGUGCCGACUCCACUCCCAAUUUCGAUUCAAGU ..................((((....((((......------.)))).............((..(((((((((....)))))))))...)).............))))........ ( -12.80, z-score = -0.46, R) >droSec1.super_4 3208723 110 - 6179234 AACUCAAACUUCUUCCCCCGAAUAUUUCGUCCCUUU------CACGAUCUCGCUCAAAACUCAAACAGUUGACAAGUGUUAAUUGUGCCGACUCCACUCCCAAUUUCGAUUCAAGU ..................((((....((((......------.)))).............((..(((((((((....)))))))))...)).............))))........ ( -12.80, z-score = -0.46, R) >droYak2.chrX 17096548 111 - 21770863 AACUCAAACUUAUCCCCCCGAACUUUUCGUCCCUUU-----UCUCGAUCUCUUUUAAAACUCAAACAGUUGACAAGUGUUAAUUGUGCCGAUUCCACUCCCAAUUUCAUUUCAAGU .......((((.......(((.....))).......-----...................((..(((((((((....)))))))))...)).....................)))) ( -9.90, z-score = -0.34, R) >droEre2.scaffold_4690 1126218 109 + 18748788 AACUCAAACUUCUUUCCCCGAACUUUUCGUCCCUUUCUCGAUCUCGAUCUCGUUCGAAAC-CAAACAGUUGACAAGUGUUAAUUAUGCCGAUUCCACUCCCAAGU--AUUUC---- .......((((.......(((((...(((...............)))....)))))....-.....(((((((....))))))).................))))--.....---- ( -11.06, z-score = 0.56, R) >droAna3.scaffold_12929 305612 91 + 3277472 -------------AACUCGAUUUAAACUCUCCCUUU-------UUUUUUGCUUUUAAAAUUUCAACAGUUGUCAAGUGUUAAUUGUGCUUAUUUUUCUUUCAAUUCUGAGU----- -------------.((((((.......)).......-------....(((.....(((((....(((((((........)))))))....))))).....)))....))))----- ( -8.30, z-score = 0.07, R) >droPer1.super_25 217601 95 + 1448063 ------AACCCCCAACCCCCUUUCCCCCGUCCCCAU-------UUUUUCGGGCC---ACUUUGGCCAGUUGACAAGUGUUAAUUGUGCCGAUUCCCAAUUCGAUUCCAAGU----- ------..............................-------......(((..---...(((((((((((((....)))))))).)))))..)))...............----- ( -19.50, z-score = -2.26, R) >droWil1.scaffold_181096 11837423 84 + 12416693 -----------------AACUACAAUUGGUUAUUAA------CUUGUUGUUGUC-----CCAGACCAGAUGACAAGUGUUAAUUGUGCCGAAUGUAUACCCAAAAUAUAUAU---- -----------------...((((.(((((.(((((------(...((((..((-----........))..))))..))))))...))))).))))................---- ( -19.50, z-score = -2.80, R) >consensus AACUCAAACUUCUUCCCCCGAACAUUUCGUCCCUUU______CUCGAUCUCGCUCAAAACUCAAACAGUUGACAAGUGUUAAUUGUGCCGAUUCCACUCCCAAUUUCGAUUC____ ................................................................(((((((((....))))))))).............................. ( -5.71 = -6.34 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:25 2011