| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,740,442 – 3,740,497 |
| Length | 55 |
| Max. P | 0.804116 |
| Location | 3,740,442 – 3,740,497 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 67 |
| Reading direction | forward |
| Mean pairwise identity | 85.78 |
| Shannon entropy | 0.22368 |
| G+C content | 0.54191 |
| Mean single sequence MFE | -15.92 |
| Consensus MFE | -13.94 |
| Energy contribution | -13.78 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.804116 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3740442 55 + 22422827 CGGUCCGCGUCAAAAAUCAUAGCGGUCCAAAUGGCUUAAGACC-----GCCAACCGCCAA------- .((.((((.............)))).))...((((........-----))))........------- ( -15.72, z-score = -1.98, R) >droEre2.scaffold_4690 1123683 62 + 18748788 CGGUCCGCGUUUAAAAUCAUAGCGGUCCAAAUGGCUUAAGACC-----GCCAGCCGCCAGCCGCCAA .((.((((.............)))).))...((((........-----))))((.(....).))... ( -16.52, z-score = -0.54, R) >droYak2.chrX 17093900 67 - 21770863 CGGUCUGCGUUAAAAAUCAUAGCGGUCCAAAUGGCUUAAGAUCAAAUGGCCAACCGCCAACCGCCAA ((((..((((((.......))))(((.....(((((...........))))))))))..)))).... ( -15.90, z-score = -0.74, R) >droSec1.super_4 3206187 55 - 6179234 CGGUCCGCGUCAAAAAUCAUAGCGGUCCAAAUGGCUUAAGACC-----GCCAACCGCCAA------- .((.((((.............)))).))...((((........-----))))........------- ( -15.72, z-score = -1.98, R) >droSim1.chrX 2746150 55 + 17042790 CGGUCCGCGUCAAAAAUCAUAGCGGUCCAAAUGGCUUAAGACC-----GCCAACCGCCAA------- .((.((((.............)))).))...((((........-----))))........------- ( -15.72, z-score = -1.98, R) >consensus CGGUCCGCGUCAAAAAUCAUAGCGGUCCAAAUGGCUUAAGACC_____GCCAACCGCCAA_______ .((.((((.............)))).))...((((.............))))............... (-13.94 = -13.78 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:24 2011