| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,731,467 – 3,731,557 |
| Length | 90 |
| Max. P | 0.732426 |
| Location | 3,731,467 – 3,731,557 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 65.22 |
| Shannon entropy | 0.53800 |
| G+C content | 0.41089 |
| Mean single sequence MFE | -20.66 |
| Consensus MFE | -13.27 |
| Energy contribution | -12.46 |
| Covariance contribution | -0.81 |
| Combinations/Pair | 1.35 |
| Mean z-score | -0.80 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.732426 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3731467 90 + 22422827 GUGGGAUGAUUAUGCGUUCGAUUCAAUUGUAUUGUAUGUCGAGCGGCAAAGUGAAAAAGUGUCGCAUAAG-ACGAUCAUGUAACGGUGUGG------ ((((.....(((((((((((((.((((...))))...)))))))((((...(....)..)))))))))).-....))))............------ ( -23.20, z-score = -1.01, R) >droAna3.scaffold_12929 293328 92 + 3277472 ---UGAUGAUCAUGCGCUUUAAAUGAUCUUA--CUAAUUGAUUUGAUCAAACCGGCAAUUAUCGCAGAAAUAAAGUCUGAUGAUGAAAAAUGAAUAA ---......((((..(((.....(((((...--...........)))))....)))..((((((((((.......)))).))))))...)))).... ( -15.94, z-score = -0.92, R) >droSec1.super_4 3197597 85 - 6179234 GUGGGAUGAUUAUGCGUUCGAUUAAAUU-----GUAUGUCGAGCGGCAAAGUGCCAAAGUGUCGCAUAAG-ACGAUCAUGUAACGGUGUGG------ ((.(.((((((..(((((((((......-----....)))))))(((.....)))...))(((......)-)))))))).).)).......------ ( -22.70, z-score = -0.80, R) >droSim1.chrX 2737249 85 + 17042790 GUGGGAUGAUUAUGCGUUCGAUUAGAUU-----GUAUGUCGAGCGGCAAAGUGCAAAAGUGUCGCAUAAG-ACGAUCAUGUAACGGUAUGG------ ((.(.(((((((((((.((.....)).)-----))))(((..((((((...(....)..))))))....)-)))))))).).)).......------ ( -20.80, z-score = -0.47, R) >consensus GUGGGAUGAUUAUGCGUUCGAUUAAAUU_____GUAUGUCGAGCGGCAAAGUGCAAAAGUGUCGCAUAAG_ACGAUCAUGUAACGGUAUGG______ ....(((..(((((((((((((...............)))))))((((...........)))))))))).....))).................... (-13.27 = -12.46 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:23 2011