| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,903,113 – 9,903,223 |
| Length | 110 |
| Max. P | 0.525915 |
| Location | 9,903,113 – 9,903,223 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 64.68 |
| Shannon entropy | 0.66851 |
| G+C content | 0.43596 |
| Mean single sequence MFE | -30.55 |
| Consensus MFE | -11.68 |
| Energy contribution | -11.38 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525915 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9903113 110 + 23011544 CCAUUGCAACUUGUCGAGCAAGACUCUGGAUUU-UUGAGCCUUAGUUG-GUGCUUA-AAUAGGGAGCA---GAAUAAAUGGCAUAGCAGGCCGCUGAUAAGGU-CGUCCAGGGUCGU- ...((((..........))))((((((((((..-..((.(((((.(..-((((((.-......)))).---........(((.......)))))..)))))))-)))))))))))..- ( -34.00, z-score = -0.97, R) >droWil1.scaffold_180700 6388559 112 - 6630534 CAAUUGU--UUGUUGGACCGAUAUUCCAGAACAUUAAGUCCUGAGAUUUUUGUCAACAAUUGAAGGCA---ACGCCACCGAUAUUCCAAGACUUUAA-GUGCUAUAACUUUGGUUCGC .......--.....(((((((..((..((.((...(((((.((.(((....)))....((((..(((.---..)))..))))....)).)))))...-)).))..))..))))))).. ( -21.40, z-score = -0.20, R) >dp4.chrXR_group8 4329225 116 - 9212921 CCAUUGGGACGGUUUCAGAGAAACGAUUGAUUUCUUGAGCUCAAGCCGAGUGCUUA-UAUAGGAAGUACCAUGAGAGUUGGUAUGUUAUUUCUCUGAUAAGCUGUGUCUAUGGUUCA- ((((.((.(((((((((((((((..((...((((((((((.(.......).)))))-...)))))(((((((....).))))))))..)))))))))..)))))).)).))))....- ( -37.10, z-score = -2.75, R) >droEre2.scaffold_4929 10519175 110 + 26641161 CCAUUUCAACUACUCGAGCAAGACUCUGGAUUU-UUGAGCCUCAGAUU-GUGCUUA-AAUAGGAAGCA---AAGAAAAUGACAUAGCAGGGAACUGAUAAGGUAC-UCCAGGGUCGU- .....................(((((((((...-..(.((((((....-.(((((.-......)))))---.......))).....(((....)))....))).)-)))))))))..- ( -25.70, z-score = -0.23, R) >droYak2.chr2L 12594203 110 + 22324452 CCAUUGCAACUAUUCGAGCAAGACUCUGGAUUU-UUGAGCCUUAGUUG-GUGCUUA-AAUAGGAAGCA--AAGAAAGU-GGCAUAGCACUGAGCUGAUAAGGUUU-UCCAGGGUCGU- ...((((..........))))(((((((((...-..((((((((.(..-((((((.-......)))).--.....(((-(......))))..))..)))))))))-)))))))))..- ( -33.90, z-score = -1.82, R) >droSec1.super_3 5350572 110 + 7220098 CCAUUGCAACUUUUCGAGCAAGACUCUGGAUUU-UUGAGCCUUAGUUG-GUGCUUA-AAUAGGGAGCA---GAACAAAUGACAUAGCAGGUCGCUGAUAAGGU-CAGCCAGGGUCGU- ...((((..........))))((((((((..((-(((..(((((.(((-.....))-).)))))..))---)))....((((....(((....))).....))-)).))))))))..- ( -31.20, z-score = -0.81, R) >consensus CCAUUGCAACUAUUCGAGCAAGACUCUGGAUUU_UUGAGCCUUAGUUG_GUGCUUA_AAUAGGAAGCA___AAAAAAAUGACAUAGCAGGGCGCUGAUAAGGU_C_UCCAGGGUCGU_ .....................((((((((.....................(((((........)))))..................(((....)))...........))))))))... (-11.68 = -11.38 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:29:14 2011