| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,709,075 – 3,709,174 |
| Length | 99 |
| Max. P | 0.685388 |
| Location | 3,709,075 – 3,709,174 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 75.39 |
| Shannon entropy | 0.45184 |
| G+C content | 0.54753 |
| Mean single sequence MFE | -34.32 |
| Consensus MFE | -19.08 |
| Energy contribution | -21.62 |
| Covariance contribution | 2.53 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.685388 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3709075 99 + 22422827 GGCUGUGUGAUGCGAUGAU-GAUGGUUAUCGCGGAACGGGGCUGUCAUUGAACCUGCUCCGU--GGCUCCA--CGGUUUCGUCGCAAAGCAUUGUCUUCCAUUC------- (((.((((..((((((((.-..(((...(((((((.((((............)))).)))))--))..)))--.....))))))))..)))).)))........------- ( -37.90, z-score = -2.15, R) >droSim1.chrX_random 1501523 99 + 5698898 GGCUGUGUGAUGCGAUGAU-GAUGGUUAUCGCGGAACGGGGCUGUCAUUGAACCUGCUCCGU--GGCUCCA--CGGUUCCGUCGCAAAGCAUUGUCUUCCAUUC------- .(((.((((((((((((((-....))))))))((((((((((.((......))..)))))((--(....))--).))))))))))).)))..............------- ( -40.10, z-score = -2.64, R) >droSec1.super_4 3175746 99 - 6179234 GGCUGUGUGAUGCGAUGAU-GAUGGUUAUCGCGGAACGGGGCUGUCAUUGAACCUGCUCCGU--GGCUCCA--CGGUUCCGUCGCCAAGCAUUGUCUUCCAUUC------- .(((..(((((((((((((-....))))))))((((((((((.((......))..)))))((--(....))--).))))))))))..)))..............------- ( -37.70, z-score = -1.70, R) >droYak2.chrX 17061147 106 - 21770863 GGCUGUGUGAUGCGAUGAU-GAUGGUUAUCGCGGAACGGGGCUGUCAUUGAACCUGCUCCGU--GGCUCCA--CGGUUUCGUCGCAAAGCAUUGUCUGCCAUCUGCCAUUU (((.((((..((((((((.-..(((...(((((((.((((............)))).)))))--))..)))--.....))))))))..)))).....)))........... ( -38.90, z-score = -1.36, R) >droEre2.scaffold_4690 1091975 81 + 18748788 GGCUGUGUGAUGCGAUGAU-GAUGGUUAUCGCGGAACGGGGCUGUCAUUGAACCUGCUCCGU--GGCUCCA--UUGU-CUGCCAUUC------------------------ ((((((.....)))..((.-.((((...(((((((.((((............)))).)))))--))..)))--)..)-).)))....------------------------ ( -29.60, z-score = -1.82, R) >droAna3.scaffold_12929 267924 95 + 3277472 -----GAUGGCCCGAUGGGAGAUGAUUAUCUCUG---GUGGCUGUCAUUGAACCUGCUCCCUCCAAUCCCAUCCAAUCCGAUCCCAUACCAUUGUCUGGCUUU-------- -----...(((((((((((((((....)))))((---((((.((..((((.............))))..)).)))..)))........))))))...))))..-------- ( -21.72, z-score = 0.90, R) >consensus GGCUGUGUGAUGCGAUGAU_GAUGGUUAUCGCGGAACGGGGCUGUCAUUGAACCUGCUCCGU__GGCUCCA__CGGUUCCGUCGCAAAGCAUUGUCUUCCAUUC_______ .(((..(((((((((((((.....))))))))((((((((((.((......))..))))))).....)))..........)))))..)))..................... (-19.08 = -21.62 + 2.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:17 2011