| Sequence ID | dm3.chrX |
|---|---|
| Location | 3,693,070 – 3,693,120 |
| Length | 50 |
| Max. P | 0.761045 |
| Location | 3,693,070 – 3,693,120 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 98.67 |
| Shannon entropy | 0.01837 |
| G+C content | 0.34000 |
| Mean single sequence MFE | -10.70 |
| Consensus MFE | -10.37 |
| Energy contribution | -10.70 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.761045 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 3693070 50 - 22422827 UUUUUCAGUAUUUUGUGCGUACGAUAGUGCUCGAAAAUGUGACAACUUUU ....(((.((((((.((.((((....)))).)))))))))))........ ( -8.30, z-score = -0.31, R) >droSim1.chrX 2705016 50 - 17042790 UUUUUCAGUAUUUUGUGCGUACGAUAGUGCUGGAAAAUGUGACAACUUUU ((((((((((((((((....)))).))))))))))))............. ( -11.90, z-score = -1.93, R) >droSec1.super_1119 402 50 - 5452 UUUUUCAGUAUUUUGUGCGUACGAUAGUGCUGGAAAAUGUGACAACUUUU ((((((((((((((((....)))).))))))))))))............. ( -11.90, z-score = -1.93, R) >consensus UUUUUCAGUAUUUUGUGCGUACGAUAGUGCUGGAAAAUGUGACAACUUUU ((((((((((((((((....)))).))))))))))))............. (-10.37 = -10.70 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:12:14 2011